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snpit reports species N/A when genotype closely matches H37Rv #18

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dfornika opened this issue Jan 29, 2024 · 0 comments · Fixed by #21
Closed

snpit reports species N/A when genotype closely matches H37Rv #18

dfornika opened this issue Jan 29, 2024 · 0 comments · Fixed by #21

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@dfornika
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It seems that in cases where the sample's genotype closely matches H37Rv, the species is reported as N/A. But it should be reported as M. tuberculosis.
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Check snpit results against tbprofiler and correct when necessary BCCDC-PHL/tbprofiler-nf
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@dfornika