RigidAlignment.xml.in

<?xml version="1.0" encoding="utf-8"?>
<executable>
@MODULE_CATEGORY_CONFIG@
<title>RigidAlignment</title>
<version>1.0</version>
<contributor>Ilwoo Lyu</contributor>
<description>Rigid alignment of the landmarks on the unit sphere: the input models share the same unit sphere and their landmarks are defined as spherical coordinates (x, y, z) or vertex indices</description>
  <parameters>
    <string>
      <longflag>sphere</longflag>
      <flag>s</flag>
      <name>sphere</name>
      <description>Template sphere model</description>
    </string>

    <directory>
      <longflag>landmark</longflag>
      <flag>l</flag>
      <name>landmark</name>
      <description>Landmark directory</description>
    </directory>

    <directory>
      <longflag>mesh</longflag>
      <!-- <flag></flag> -->
      <name>mesh</name>
      <description>Mesh directory</description>
    </directory>

    <file fileExtensions=".csv">
      <longflag>inputCSV</longflag>
      <name>inputCSV</name>
      <default>0</default>
      <description>Input CSV file</description>
      </file>

    <directory>
      <longflag>output</longflag>
      <flag>o</flag>
      <name>output</name>
      <description>Output path</description>
      </directory>
      <directory>
      <longflag>lmindex</longflag>
      <name>outputLM</name>
      <description>Output path of the vertex indices of the landmarks (optional)</description>
      </directory>
      <boolean>
        <longflag>lmcoord</longflag>
        <name>lmtype</name>
      <description>regards landmarks as spherical coordinates</description>
      </boolean>

    <string>
      <longflag>suffixe_procalign</longflag>
      <name>suffixe_procalign</name>
      <description>Suffix for the name of SPHARM surfaces</description>
      <default>_pp_surf_SPHARM_procalign.vtk</default>
    </string>

    <string>
      <longflag>suffixe_surfSPHARM</longflag>
      <name>suffixe_surfSPHARM</name>
      <description>Suffix for the name of SPHARM surfaces</description>
      <default>_pp_surf_SPHARM.vtk</default>
    </string>

  </parameters>
</executable>