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train_poc_method.nim
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train_poc_method.nim
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import flambeau / [flambeau_nn, tensors]
import std / [strformat, os, strutils, sequtils, random, algorithm, options, macros]
import pkg / [cppstl]
# have to include the type definitions
#include ./nn_types
#import ./io_helpers
#include ./nn_cuts
type
MLPImpl* {.pure, header: "mlp_impl.hpp", importcpp: "MLPImpl".} = object of Module
hidden*: Linear
hidden2*: Linear
classifier*: Linear
MLP* = CppSharedPtr[MLPImpl]
ActivationFunction* = enum
afReLU, afTanh, afELU, afGeLU # , ...?
OutputActivation* = enum
ofLinear, ofSigmoid, ofTanh # , ...?
LossFunction* = enum
lfSigmoidCrossEntropy, lfMLEloss, lfL1Loss # , ...?
OptimizerKind* = enum
opNone, opSGD, opAdam, opAdamW # , opAdaGrad, opAdaBoost ?
#GenericOptimizer* = object
# case kind: OptimizerKind
# of opNone: discard
# of opSGD: sgd: CppSharedPtr[SGD]
# of opAdam: adam: CppSharedPtr[Adam]
# of opAdamW: adamW: CppSharedPtr[AdamW]
GenericOptimizer* = ref object of RootObj
SGDOptimizer* = ref object of GenericOptimizer
sgd: SGD#CppSharedPtr[SGD]
AdamOptimizer* = ref object of GenericOptimizer
adam: Adam#CppSharedPtr[Adam]
AdamWOptimizer* = ref object of GenericOptimizer
adamW: AdamW#CppSharedPtr[AdamW]
## A helper object that describes the layers of an MLP
## The number of input neurons and neurons on the hidden layer.
## This is serialized as an H5 file next to the trained network checkpoints.
## On loading a network this file is parsed first and then used to initialize
## the correct size of a network.
## In addition it contains the datasets that are used for the input.
MLPDesc* = object
path*: string # model path to the checkpoint files including the default model name!
plotPath*: string # path in which plots are placed
calibFiles*: seq[string] ## Path to the calibration files
backFiles*: seq[string] ## Path to the background data files
simulatedData*: bool
numInputs*: int
numHidden*: seq[int]
numLayers*: int
learningRate*: float
datasets*: seq[string] # Not `InGridDsetKind` to support arbitrary new columns
subsetPerRun*: int
rngSeed*: int
#
activationFunction*: ActivationFunction
outputActivation*: OutputActivation
lossFunction*: LossFunction
optimizer*: OptimizerKind
# fields that store training information
epochs*: seq[int] ## epochs at which plots and checkpoints are generated
accuracies*: seq[float]
testAccuracies*: seq[float]
losses*: seq[float]
testLosses*: seq[float]
ModelKind* = enum
mkMLP = "MLP"
mkCNN = "ConvNet"
## Placeholder for `ConvNet` above as currently defining both is problematic
ConvNet* = object
AnyModel* = MLP | ConvNet
## The batch size we use!
const bsz = 8192 # batch size
proc init*(T: type MLP): MLP =
result = make_shared(MLPImpl)
result.hidden = result.register_module("hidden_module", init(Linear, 13, 500))
result.hidden2 = result.register_module("hidden2_module", init(Linear, 13, 500))
result.classifier = result.register_module("classifier_module",
init(Linear, 500, 2))
#func init*(T: type MLPImpl): T {.constructor, importcpp: "MLPImpl::MLPImpl(Linear(13, 500); Linear(500, 2))".}
proc init*(T: type MLP, numInput: int, numLayers: int, numHidden: seq[int], numOutput = 2): MLP =
result = make_shared(MLPImpl)
if numLayers != numHidden.len:
raise newException(ValueError, "Number of layers does not match number of neurons given for each " &
"hidden layer! Layers: " & $numLayers & " and neurons per layer: " & $numHidden)
if numLayers > 2:
raise newException(ValueError, "Only up to 2 hidden layers supported with the `MLPImpl` type.")
result.hidden = result.register_module("hidden_module", init(Linear, numInput, numHidden[0]))
if numLayers == 1: # single hidden layer MLP
result.classifier = result.register_module("classifier_module", init(Linear, numHidden[0], numOutput))
else: # dual hidden layer MLP
result.hidden2 = result.register_module("hidden2_module", init(Linear, numHidden[0], numHidden[1]))
result.classifier = result.register_module("classifier_module", init(Linear, numHidden[1], numOutput))
proc init*(T: type MLP, desc: MLPDesc): MLP =
result = MLP.init(desc.numInputs, desc.numLayers, desc.numHidden)
proc initMLPDesc*(calib, back, datasets: seq[string],
modelPath: string, plotPath: string,
numHidden: seq[int],
activation: ActivationFunction,
outputActivation: OutputActivation,
lossFunction: LossFunction,
optimizer: OptimizerKind,
learningRate: float,
subsetPerRun: int,
simulatedData: bool,
rngSeed: int): MLPDesc =
result = MLPDesc(calibFiles: calib,
backFiles: back,
datasets: datasets,
path: modelPath, plotPath: plotPath,
numInputs: datasets.len,
numHidden: numHidden,
numLayers: numHidden.len,
activationFunction: activation,
outputActivation: outputActivation,
lossFunction: lossFunction,
optimizer: optimizer,
learningRate: learningRate,
subsetPerRun: subsetPerRun,
simulatedData: simulatedData,
rngSeed: rngSeed)
proc initGenericOptim*(model: AnyModel, mlpDesc: MLPDesc): GenericOptimizer = # {.noInit.} =
let lr = mlpDesc.learningRate
#result = GenericOptimizer(kind: mlpDesc.optimizer) #opNone)
case mlpDesc.optimizer
of opNone: doAssert false
of opSGD:
#var sgd = makeShared(SGD)
#var sgdD = sgd.deref
var sgdD = SGD.init(
model.deref.parameters(),
SGDOptions.init(lr).momentum(0.2) # .weight_decay(0.001)
)
#result = GenericOptimizer(kind: opSGD, sgd: sgd)
result = SGDOptimizer(sgd: sgdD)
of opAdam:
#var adam = makeShared(Adam)
#var adamD = adam.deref
var adamD = Adam.init(
model.deref.parameters(),
AdamOptions.init(lr)
)
#result = GenericOptimizer(kind: opAdam, adam: adam)
#result.adam = adam
result = AdamOptimizer(adam: adamD)
of opAdamW:
#var adamW = makeShared(AdamW)
#var adamWD = adamW.deref
var adamWD = AdamW.init(
model.deref.parameters(),
AdamWOptions.init(lr)
)
#result = GenericOptimizer(kind: opAdamW, adamW: adamW)
#result.adamW = adamW
result = AdamWOptimizer(adamW: adamWD)
#template initGenericOptim*(model: AnyModel, mlpDesc: MLPDesc): untyped =
# let lr = mlpDesc.learningRate
# var optim: Optimizer = Optimizer()
# case mlpDesc.optimizer
# of opSGD:
# #var sgd = makeShared(SGD)
# #var sgdD = sgd.deref
# var sgdD = SGD.init(
# model.deref.parameters(),
# SGDOptions.init(lr).momentum(0.2) # .weight_decay(0.001)
# )
# #result = GenericOptimizer(kind: opSGD, sgd: sgd)
# optim = sgdD
# of opAdam:
# #var adam = makeShared(Adam)
# #var adamD = adam.deref
# var adamD = Adam.init(
# model.deref.parameters(),
# AdamOptions.init(lr)
# )
# #result = GenericOptimizer(kind: opAdam, adam: adam)
# optim = adamD
# of opAdamW:
# #var adamW = makeShared(AdamW)
# #var adamWD = adamW.deref
# var adamWD = AdamW.init(
# model.deref.parameters(),
# AdamWOptions.init(lr)
# )
# #result = GenericOptimizer(kind: opAdamW, adamW: adamW)
# optim = adamWD
# optim
#proc `=destroy`*(go: var GenericOptimizer) = discard
#proc `=sink`*(go: var GenericOptimizer, b: GenericOptimizer) = {.error: "Not available".}
method zero_grad*(go: var GenericOptimizer) {.base.} = raise newException(Exception, "Override me!")
method zero_grad*(go: var SGDOptimizer) = go.sgd.zero_grad()
method zero_grad*(go: var AdamOptimizer) = go.adam.zero_grad()
method zero_grad*(go: var AdamWOptimizer) = go.adamW.zero_grad()
method step*(go: var GenericOptimizer) {.base.} = raise newException(Exception, "Override me!")
method step*(go: var SGDOptimizer)= go.sgd.step()
method step*(go: var AdamOptimizer)= go.adam.step()
method step*(go: var AdamWOptimizer)= go.adamW.step()
#proc zero_grad*(go: var GenericOptimizer) =
# case go.kind
# of opNone: doAssert false
# of opSGD: go.sgd.deref.zero_grad()
# of opAdam: go.adam.deref.zero_grad()
# of opAdamW: go.adamW.deref.zero_grad()
#proc step*(go: var GenericOptimizer) =
# case go.kind
# of opNone: doAssert false
# of opSGD: go.sgd.deref.step()
# of opAdam: go.adam.deref.step()
# of opAdamW: go.adamW.deref.step()
{.experimental: "views".}
proc train(model: AnyModel, #optimizer: var Optimizer,#GenericOptimizer,
input, target: RawTensor,
testInput, testTarget: RawTensor,
device: Device,
readRaw: bool,
desc: MLPDesc,
continueAfterEpoch = 0) =
# initialize the optimizer
var optimizer = initGenericOptim(model, desc)
let dataset_size = input.size(0)
var toPlot = false
var mlpDesc = desc # local mutable copy to store losses, accuracy etc in
let plotPath = mlpDesc.plotPath
const PlotEvery = 5000
let start = continueAfterEpoch
let stop = start + 100000
for epoch in start .. stop:
for batch_id in 0 ..< (dataset_size.float / bsz.float).int:
# Reset gradients.
optimizer.zero_grad()
proc initDesc(calib, back: seq[string], # data
modelOutpath, plotPath: string,
numHidden: seq[int], # number of neurons on each hidden layer
activation: ActivationFunction,
outputActivation: OutputActivation,
lossFunction: LossFunction,
optimizer: OptimizerKind,
learningRate: float,
subsetPerRun: int,
simulatedData: bool,
rngSeed: int): MLPDesc =
result = initMLPDesc(calib, back, @[],
modelOutpath, plotPath,
numHidden,
activation, outputActivation, lossFunction, optimizer,
learningRate,
subsetPerRun,
simulatedData,
rngSeed)
## XXX: inside of a generic proc (what we would normally do) the `parameters` call
## breaks! Nim doesn't understand that the MLP / ConvNet type can be converted
## to a `Module`!
proc trainModel[T](Typ: typedesc[T],
device: Device,
mlpDesc: MLPDesc,
continueAfterEpoch = -1
) = # : untyped {.dirty.} =
## If we are training, construct a type appropriate to
var model = Typ.init(mlpDesc)
model.to(device)
if continueAfterEpoch > 0:
model.load(mlpDesc.path)
when Typ is MLP:
const readRaw = false
else:
const readRaw = true
echo "Reading data"
# get training & test dataset
echo "Splitting data into train & test set"
var
trainIn, trainTarg, testIn, testTarg: RawTensor
# check if model already exists as trained file
let lr = mlpDesc.learningRate
if not fileExists(mlpDesc.path) or continueAfterEpoch > 0:
model.train(
trainIn.to(kFloat32).to(device),
trainTarg.to(kFloat32).to(device),
testIn.to(kFloat32).to(device),
testTarg.to(kFloat32).to(device),
device,
readRaw,
mlpDesc,
continueAfterEpoch)
model.save(mlpDesc.path)
proc main(calib, back: seq[string] = @[],
ε = 0.8, # signal efficiency for background rate prediction
rocCurve = false,
model = "MLP", # MLP or ConvNet #model = mkMLP ## parsing an enum here causes weird CT error in cligen :/
modelOutpath = "/tmp/trained_model.pt",
numHidden: seq[int] = @[], ## number of neurons on the hidden layers. One number per layer.
activation: ActivationFunction = afReLU,
outputActivation: OutputActivation = ofLinear,
lossFunction: LossFunction = lfSigmoidCrossEntropy,
optimizer: OptimizerKind = opSGD,
learningRate = Inf,
subsetPerRun = 1000,
plotPath = "",
clampOutput = 50.0,
simulatedData = false,
continueAfterEpoch = -1,
rngSeed = 1337) =
let desc = initDesc(calib, back, modelOutpath, plotPath,
numHidden,
activation, outputActivation, lossFunction, optimizer,
learningRate,
subsetPerRun,
simulatedData,
rngSeed)
Torch.manual_seed(1)
var device_type: DeviceKind
if Torch.cuda_is_available():
echo "CUDA available! Training on GPU."
device_type = kCuda
else:
echo "Training on CPU."
device_type = kCPU
let device = Device.init(device_type)
let mKind = parseEnum[ModelKind](model)
if mKind == mkMLP:
MLP.trainModel(device,
desc,
continueAfterEpoch)
#else:
# ConvNet.trainModel(fname, device, run, ε, totalTime, rocCurve, predict)
when isMainModule:
import cligen/argcvt
proc argParse[T: enum](dst: var T, dfl: T, a: var ArgcvtParams): bool =
var val = a.val
try:
dst = parseEnum[T](val)
result = true
except ValueError:
raise newException(Exception, "Invalid enum value: " & $val)
import cligen
dispatch main