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Obsoletion notice: GO:0044237 cellular metabolic process, GO:0046950 cellular ketone body metabolic process, GO:0046379 extracellular polysaccharide metabolic process, GO:0031323 regulation of cellular metabolic process, GO:0006521 regulation of cellular amino acid metabolic process, GO:0031324 negative regulation of cellular metabolic process, GO:0031325 positive regulation of cellular metabolic process #861

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edwong57 opened this issue Oct 7, 2024 · 0 comments

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@edwong57
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edwong57 commented Oct 7, 2024

Dear all,

The proposal has been made to obsolete:
GO term ID and Label
GO:0044237 cellular metabolic process
GO:0046950 cellular ketone body metabolic process
GO:0046379 extracellular polysaccharide metabolic process
GO:0031323 regulation of cellular metabolic process
GO:0006521 regulation of cellular amino acid metabolic process
GO:0031324 neg regulation of cellular metabolic process
GO:0031325 pos regulation of cellular metabolic process

The reason for obsoletion is that these terms are now redundant terms to:

GO:0008152 metabolic proces
GO:1902224 ketone body metabolic process
GO:0005976 polysaccharide metabolic process
GO:0019222 regulation of metabolic process
GO:0006521 regulation of amino acid metabolic process
GO:0009892 neg reg of metabolic process
GO:0009893 pos reg of metabolic process

Related to clean up of cellular process terms - geneontology/go-ontology#28908

Annotations:
There are 63 experimental annotations to this term by (list of impacted groups and their respective numbers of EXP and ISS annotations).
1 BHF-UCL
1 SGD
1 CGD
1 PseudoCAP
1 TAIR
52 MGI
1 RGD
4 UniProt

There are 7 InterPro2GO/UniRule/UniProtKW mappings to this term.

GO:0046950 cellular ketone body metabolic process - in goslim_pir

Annotations can be viewed here: geneontology/go-annotation#5470.

These terms are being replaced with corresponding terms without 'cellular' in the name:
GO:0008152 metabolic proces
GO:1902224 ketone body metabolic process
GO:0005976 polysaccharide metabolic process
GO:0019222 regulation of metabolic process
GO:0006521 regulation of amino acid metabolic process
GO:0009892 neg reg of metabolic process
GO:0009893 pos reg of metabolic process

Any comments can be added to the issue: geneontology/go-ontology#29021.
Unless objections are received by Oct 14, 2024, we will assume that you agree to this change.

Thanks,

The GO-Ontology Editors

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