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Issue with temporalMicrobiome20 #40

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microsud opened this issue May 12, 2022 · 5 comments
Closed

Issue with temporalMicrobiome20 #40

microsud opened this issue May 12, 2022 · 5 comments
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@YagmurSimsekk

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@microsud
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The temporalMicrobiome20 dataset seems to be incorrect. The assay has NAs and abundance values are characters not numeric

image
@antagomir
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Thanks! @YagmurSimsekk any comments? Seems that the assay has not been converted into numeric matrix form, can it be fixed?

@YagmurSimsekk
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Thanks! @microsud Can you show me the original source of the data? I tried to find it from your repository, but couldn't.

@microsud
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I did not create this data ;) This data in part of the miaTime in the data-folder.

@YagmurSimsekk
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Sorry, I was mistaken by minimalgut data set that was taken from your repository. All good now, thanks :)

@antagomir
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Closed via #41

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@antagomir @microsud @YagmurSimsekk