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validator.ini
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validator.ini
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[general]
genome_builds=genome_builds.ini
[cache]
tmpdir=/modencode/raw/tmp/www1
[wiki]
username=Validator_Robot
password=pw
domain=modencode_wiki
soap_wsdl_url=http://wiki.modencode.org/project/extensions/DBFields/DBFieldsService.wsdl
cvterm_validator_url=http://wiki.modencode.org/project/extensions/DBFields/DBFieldsCVTerm.php?get_canonical_url=
[databases flybase_awol]
username=db_public
password=pw
host=awol.lbl.gov
port=5432
dbname=FB2009_07
[databases modencode]
username=db_public
password=pw
host=modencode-db.oicr.on.ca
port=5432
dbname=modencode_chado
[databases wormbase]
username=db_public
password=pw
host=awol.lbl.gov
port=5432
dbname=wormbase_190
[databases flybase]
username=db_public
password=pw
host=modencode-db.oicr.on.ca
port=5432
dbname=fb2010_09
[remote_file_storage]
host=74.114.99.142
remote_url_prefix=rsync://uberkeley@74.114.99.142::berkeley/pipeline/
local_web_prefix=http://submit.modencode.org/submit/public/get_file/
remote_transfer_daemon=LANG=C devel/fetcher.pl
remote_user=uberkeley
identity_file=id_rsa.uic
[default_cvs SO]
type=OBO
url=http://song.cvs.sourceforge.net/viewvc/song/ontology/so.obo
[default_cvs sequence]
type=OBO
url=http://song.cvs.sourceforge.net/viewvc/song/ontology/so.obo
[default_cvs xsd]
type=OBO
url=http://wiki.modencode.org/project/extensions/DBFields/ontologies/xsd.obo
[default_cvs modencode]
type=OBO
url=http://wiki.modencode.org/project/extensions/DBFields/ontologies/modencode-helper.obo
[default_cvs MO]
type=OBO
url=http://www.berkeleybop.org/ontologies/obo-all/mged/mged.obo
[default_cvs mged]
type=OBO
url=http://www.berkeleybop.org/ontologies/obo-all/mged/mged.obo
[default_cvs CARO]
type=OBO
url=http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/anatomy/caro/caro.obo
[default_cvs GB]
type=remote
[default_cvs GFF]
type=unknown
[modencode_project Celniker]
url=http://www.modencode.org/Celniker.shtml
subgroups=Brent, Celniker, Gingeras, Brenner, Cherbas, Graveley, Perrimon, Hoskins, Oliver
[modencode_project White]
url=http://www.modencode.org/White.shtml
subgroups=White
[modencode_project Karpen]
url=http://www.modencode.org/Karpen.shtml
subgroups=Karpen, Pirrotta, Elgin, Kuroda, Park
[modencode_project Lai]
url=http://www.modencode.org/Lai.shtml
subgroups=Lai, Hannon
[modencode_project MacAlpine]
url=http://www.modencode.org/MacAlpine.shtml
subgroups=MacAlpine, Orr-Weaver
[modencode_project Henikoff]
url=http://www.modencode.org/Henikoff.shtml
subgroups=Henikoff, Ahmad
[modencode_project Waterston]
url=http://www.modencode.org/Waterston.shtml
subgroups=Waterston, Gerstein, Green, MacCoss, Miller, Reinke, Slack
[modencode_project Lieb]
url=http://www.modencode.org/Lieb.shtml
subgroups=Lieb, Ahringer, Dernburg, Desai, Green, Liu, Segal, Strome
[modencode_project Snyder]
url=http://www.modencode.org/Snyder.shtml
subgroups=Snyder, Gerstein, Hyman, Kim, Reinke
[modencode_project Piano]
url=http://www.modencode.org/Piano.shtml
subgroups=Piano, Gunsalus, Kim, Rajewsky
[modencode_project Oliver]
url=http://www.modencode.org/Oliver.shtml
subgroups=Oliver