Releases: pachterlab/kb_python
Releases · pachterlab/kb_python
v0.2.0
v0.1.4
v0.1.3
v0.1.2
v0.1.1
v0.0.8
info
- Displays current package, kallisto and bustools versions.
ref
- Input arguments have changed:
ref
now takes a genomic FASTA file and GTF as positional arguments - The genome is sliced into cDNA and intron (if
--velocity
) FASTAs - New option:
-c
Path to the cDNA FASTA to be generated - New option:
-n
Path to the intron FASTA to be generated (required for--velocity
) - New option:
-a
Path to generate cDNA transcripts to be captured (required for--velocity
) - New option:
-r
Path to generate intron transcripts to be captured (required for--velocity
)
Binaries
- Kallisto and Bustools binaries for Windows, Linux and MacOS are now included in the package. Run
kb info
for versions.