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DESCRIPTION
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DESCRIPTION
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Package: scTensor
Type: Package
Title: Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition
Version: 2.4.1
Authors@R: c(person("Koki", "Tsuyuzaki", role = c("aut", "cre"),
email = "k.t.the-answer@hotmail.co.jp"),
person("Kozo", "Nishida", role = "aut",
email = "kozo.nishida@gmail.com"))
Depends: R (>= 4.1.0)
Imports: methods,
RSQLite,
igraph,
S4Vectors,
plotly,
reactome.db,
AnnotationDbi,
SummarizedExperiment,
SingleCellExperiment,
nnTensor (>= 1.1.5),
ccTensor (>= 1.0.2),
rTensor (>= 1.4.8),
abind,
plotrix,
heatmaply,
tagcloud,
rmarkdown,
BiocStyle,
knitr,
AnnotationHub,
MeSHDbi (>= 1.29.2),
grDevices,
graphics,
stats,
utils,
outliers,
Category,
meshr (>= 1.99.1),
GOstats,
ReactomePA,
DOSE,
crayon,
checkmate,
BiocManager,
visNetwork,
schex,
ggplot2
Suggests: testthat,
LRBaseDbi,
Seurat,
scTGIF,
Homo.sapiens
Description: The algorithm is based on the non-negative tucker decomposition (NTD2) of nnTensor.
License: Artistic-2.0
biocViews: DimensionReduction,
SingleCell,
Software,
GeneExpression
VignetteBuilder: knitr