set_flags

# External libraries:
NETCDFF_ROOT=/path/to/dynamically/linked/netcdf-fortran
NETCDFF_LIBS=-lnetcdff

# Compiler:
FC=gfortran

# Compiler flags:
FCFLAGS="-I${NETCDFF_ROOT}/include"

# Linker flags with RPATHs:
LDFLAGS="-L${NETCDFF_ROOT}/lib"
LDFLAGS=$(echo $LDFLAGS | sed 's%\(-L\s*\(\S\+\)\)%\1 -Wl,-rpath -Wl,\2%g')

# Libraries:
LIBS="${NETCDFF_LIBS}"

echo FC: $FC
echo FCFLAGS: $FCFLAGS
echo LDFLAGS: $LDFLAGS
echo LIBS: $LIBS

$(cd "$(dirname "$0")"; pwd)/configure FC="$FC" FCFLAGS="$FCFLAGS" LDFLAGS="$LDFLAGS" LIBS="$LIBS"