Code and report for a small tool to optimize 16S sequencing pipelines
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Updated
Jun 13, 2014 - C
Code and report for a small tool to optimize 16S sequencing pipelines
Chloroplast 16S removal from Metagenomics samples (or any NGS samples)
A repository containing a demo microbiome workflow for R and Python
Vectorization and Unsupervised Learning of Mouse Operation Taxonomic Units to determine which species of bacteria form distinct groups in a dataset.
process raw reads from ubiome
This is an automatic pipeline for analysis of amplicon sequence data including 16S, 18S and ITS. It wraps QIIME commands and complements them with additional analysis where QIIME is not good at, such as combine multiple sequencing runs, OTU clustering and chimeric removal with UP ARSE, alignment filtering with Gblock, removing Chloroplast sequen…
Repository for 16S paper
A novel taxonomy-independent deep learning microbiome approach allow for accuaret classification of human epithelial materials
Easy-to-use tool facilitating work with Mothur.
Analysis scripts for Gortzia yakutica paper
BSc project: metagenomic analysis of urban park soil. Breakdown of some of the code I used can be viewed on this website:
Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies
List of sequencer runs; QC and run Info from each run, modular display of all existing (uploaded) types of info and statistics.
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