kallisto task for RNA-seq workflow
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Updated
May 20, 2020 - Kotlin
kallisto task for RNA-seq workflow
Differential gene expression analysis of Nannochloropsis oceanica growth with or without beneficial/harmful bacteria.
Iso-seq and Kallisto integration
Automated and friendly RNA-seq analysis (deprecated)
Library & executable for converting Themisto pseudoalignments to kallisto pseudoalignments.
Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.
kallisto indexing and tag extraction
GenePattern Notebook running Kallisto
Assembly of RNA transcriptome, differential expression analysis, identification of lncRNA candidates based on genomic context and protein coding potential.
Pipeline for analysing differential isoforms in fetal and adult cardiac fibroblasts
Análises de expressão diferencial de dados de sequenciamento de segunda geração (high-throughput sequencing reads, RNA-seq) realizadas utilizando as ferramentas kallisto.
Automated and friendly RNA-seq analysis (migrated to Parse Server)
Bulk RNA-seq analytical pipeline, including using Snakemake to run main steps such as Kallisto read mapping, QC, Principal Component Analysis (PCA), and other downstream analysis.
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