A dashboard to explore and download the duplicated gene repertoire in eukaryote species
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Updated
Oct 8, 2024 - R
A dashboard to explore and download the duplicated gene repertoire in eukaryote species
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
An R package for comparative transcriptomic analyses of hybrids and their progenitors
Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
An R package for predicting ploidal level from sequence data using site-based heterozygosity
R-based autopolyploid population and population genetic simulation
Scripts, information and data for publication in APPS.
Data and code associated with the paper "HybridExpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors"
Script and data supporting a Brassica network analysis manuscript submitted to Applications in Plant Sciences
AKRUP: ancestral karyotype reconstruction universal pipeline
Python package and CLI for whole-genome duplication related analyses. This package is deprecated in favor of https://github.com/heche-psb/wgd.
WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis
An R package for flow cytometry histogram analysis
Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
Bioinformatic methods used in McElroy et al. (2021). Asexuality associated with marked genomic expansion of tandemly repeated rRNA and histone genes. Molecular Biology and Evolution.
How does disturbance on a landscape affect the establishment of new polyploid plant species?
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