This project was conducted for the Stanford BioHacks hackathon.
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Updated
Sep 24, 2024 - R
This project was conducted for the Stanford BioHacks hackathon.
nf-pipeline template for custom data analysis, renders report
Custom workflow for analysis of RNAseq data
IMOM - A pipeline for interacting with, processing, and analyzing multi-OM datasets in phylogenetic and evolutionary context
Set of classes, codes and scripts which I use for Omics data analysis
This repo is a template for running differential gene expression analysis of RNA-seq count data followed by gene set enrichment analysis. This workflow is run in R using Rmarkdown. It is based around the popular R packages, DESeq2, fGSEA, and others.
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