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I am preparing GWAS PIP input using torus .
When I run the example code "torus -d Height.torus.zval.gz --load_zval -dump_pip Height.gwas.pip" ,
I noticed there are 4 columns in the output file "Height.gwas.pip" .
I think the fourth column is the prior probability for a SNP to be causal, but how is this value determined?
Thank you so much for your reply
The text was updated successfully, but these errors were encountered:
Hi !
Prof. @xqwen
I am preparing GWAS PIP input using torus .
When I run the example code "torus -d Height.torus.zval.gz --load_zval -dump_pip Height.gwas.pip" ,
I noticed there are 4 columns in the output file "Height.gwas.pip" .
I think the fourth column is the prior probability for a SNP to be causal, but how is this value determined?
Thank you so much for your reply
The text was updated successfully, but these errors were encountered: