Merge pull request #48 from seung-lab/return_update_id_map #156
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Annotation Engine | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - fix_tests | |
| paths: | |
| - "annotationengine/**" | |
| - "tests/**" | |
| pull_request: | |
| branches: [master] | |
| jobs: | |
| test: | |
| name: Test against different Python versions | |
| runs-on: ubuntu-latest | |
| services: | |
| postgres: | |
| image: postgis/postgis:13-master | |
| env: | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: test_aligned_volume | |
| ports: | |
| - 5432:5432 | |
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3.7 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.7 | |
| - uses: actions/cache@v2 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/test_requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: true | |
| python-version: 3.7 | |
| - name: Install dependencies | |
| shell: bash -l {0} | |
| run: | | |
| pip install flake8 pytest | |
| pip install -r requirements.txt | |
| if [ -f test_requirements.txt ]; then pip install -r test_requirements.txt; fi | |
| - name: Lint with flake8 | |
| shell: bash -l {0} | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| shell: bash -l {0} | |
| run: | | |
| pytest |