Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

CU-8693t24ed: Add workaround for older DeID models in newer MedCAT #397

Merged
merged 3 commits into from
Feb 12, 2024
Merged

CU-8693t24ed: Add workaround for older DeID models in newer MedCAT #397

Changes from 1 commit
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
1aa0cf9
CU-8693t24ed: Add workaround for older DeID models in newer MedCAT
mart-r Feb 8, 2024
e0ea918
CU-8693t24ed: Add a check for existing attribute before changing it
mart-r Feb 8, 2024
6cda24d
Merge branch 'master' into CU-8693t24ed-fix-transformers-NER
mart-r Feb 8, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 3 additions & 0 deletions medcat/ner/transformers_ner.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -79,6 +79,9 @@ def __init__(self, cdb, config: Optional[ConfigTransformersNER] = None,

def create_eval_pipeline(self):
self.ner_pipe = pipeline(model=self.model, task="ner", tokenizer=self.tokenizer.hf_tokenizer)
# NOTE: this will fix the DeID model(s) created before medcat 1.9.3
# though this fix may very well be unstable
self.ner_pipe.tokenizer._in_target_context_manager = False
mart-r marked this conversation as resolved.
Show resolved Hide resolved
self.ner_pipe.device = self.model.device

def get_hash(self):
Expand Down
Loading