Branch obs sensitivity #251
Workflow file for this run
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| name: test-fice | |
| on: [push] | |
| jobs: | |
| fice-install: | |
| name: Install fenics_ice | |
| runs-on: ubuntu-latest | |
| steps: | |
| # Get fice code | |
| - uses: actions/checkout@v2 | |
| with: | |
| path: 'fenics_ice' | |
| # Get tlm-adjoint code | |
| - uses: actions/checkout@v2 | |
| with: | |
| repository: 'EdiGlacUQ/tlm_adjoint' | |
| path: 'tlm_adjoint' | |
| # Get micromamba & prerequisites | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| env: | |
| # Increase this value to reset cache if environment.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: anaconda-client-env | |
| use-mamba: true | |
| - name: Install mamba environment from fenics_ice/environment.yml | |
| # if: steps.cache-conda.outputs.cache-hit != 'true' | |
| uses: mamba-org/provision-with-micromamba@main | |
| with: | |
| environment-name: fenics_ice | |
| environment-file: fenics_ice/environment.yml | |
| channel-priority: strict | |
| #auto-update-conda: true | |
| #use-only-tar-bz2: true # necessary for caching | |
| # Get conda info | |
| - name: mamba info | |
| shell: bash -l {0} | |
| run: | | |
| micromamba info | |
| micromamba list | |
| which python | |
| python -m pip install scipy==1.9.3 | |
| # We install fenics_ice and tlm_adjoint as developing modules | |
| - name: Install repositories as dev modules | |
| shell: bash -l {0} | |
| run: | | |
| ls $GITHUB_WORKSPACE | |
| cd $GITHUB_WORKSPACE/fenics_ice | |
| pip install -e . | |
| cd $GITHUB_WORKSPACE/tlm_adjoint | |
| pip install -e . | |
| micromamba info | |
| # Test fenics ice! | |
| - name: Test fice | |
| shell: bash -l {0} | |
| run: | | |
| cd $GITHUB_WORKSPACE/fenics_ice/ | |
| which python | |
| pytest -v --order-scope=module --color=yes | |
| mpirun -n 2 pytest -v --order-scope=module --color=yes | |
| mpirun -n 2 pytest -m key --key=smith --color=yes |