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@EngreitzLab

Engreitz Lab

Engreitz Lab @ Stanford University

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  1. ABC-GWAS-Paper ABC-GWAS-Paper Public

    Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021

    PostScript 12 2

  2. CRISPRDesigner CRISPRDesigner Public

    Design and selection of gRNAs for pooled CRISPRi tiling screens

    Python 1

Repositories

Showing 10 of 21 repositories
  • gene_network_evaluation Public

    Evaluation framework for computationally inferred gene networks from single-cell data.

    EngreitzLab/gene_network_evaluation’s past year of commit activity
    Jupyter Notebook 8 GPL-2.0 7 16 0 Updated Oct 8, 2024
  • IGVF_E2G_jamboree_2024 Public

    Helper scripts for IGVF E2G pillar project jamboree 2024

    EngreitzLab/IGVF_E2G_jamboree_2024’s past year of commit activity
    R 0 1 0 0 Updated Sep 26, 2024
  • CRISPR_comparison Public

    Snakemake workflow for comparing E-G links to experimental data

    EngreitzLab/CRISPR_comparison’s past year of commit activity
    R 10 2 0 0 Updated Sep 24, 2024
  • ENCODE_rE2G Public

    Enhancer-Gene Prediction Pipeline based on logistic regression and ABC model

    EngreitzLab/ENCODE_rE2G’s past year of commit activity
    Python 4 0 0 2 Updated Sep 9, 2024
  • sc-E2G Public

    Pipeline to run sc-E2G

    EngreitzLab/sc-E2G’s past year of commit activity
    Python 3 0 0 0 Updated Sep 5, 2024
  • variant-flowfish Public

    Analysis for Variant-FlowFISH experiments

    EngreitzLab/variant-flowfish’s past year of commit activity
    Python 2 GPL-3.0 0 1 0 Updated Aug 27, 2024
  • cNMF_pipeline Public
    EngreitzLab/cNMF_pipeline’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Jul 17, 2024
  • eQTLEnrichment Public
    EngreitzLab/eQTLEnrichment’s past year of commit activity
    R 1 0 0 0 Updated Jun 26, 2024
  • encode_dataset_processing Public

    Code to get the encode datasets that will get run through ABC + Encode-rE2G

    EngreitzLab/encode_dataset_processing’s past year of commit activity
    Python 0 1 0 0 Updated Jun 7, 2024
  • crispri-flowfish Public
    EngreitzLab/crispri-flowfish’s past year of commit activity
    Python 1 0 1 0 Updated Feb 6, 2024
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