Merge pull request #1358 from nakib103/fix_header

Hotfix: update dir masking pattern in header
Ensembl · Feb 21, 2023 · fc75dcc · fc75dcc
2 parents 9b7b961 + a495204
commit fc75dcc
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Showing 2 changed files with 9 additions and 2 deletions.
diff --git a/modules/Bio/EnsEMBL/VEP/Config.pm b/modules/Bio/EnsEMBL/VEP/Config.pm
@@ -696,7 +696,14 @@ sub new {
     next if !defined($value) || (ref($value) eq "ARRAY" && @{$value} == 0) || grep { /$flag/ } @skip_opts;
 
     $value = join(" --$flag ", @{$value}) if ref($value) eq "ARRAY";
-    $value =~ s/(\/[\w-]+?)+\//\[PATH\]\//g;
+
+    if ($^O eq "MSWin32"){
+      $value =~ s/.+(?=\\)/\[PATH\]/g;
+    }
+    else {
+      $value =~ s/.+(?=\/)/\[PATH\]/g;
+    }
+
     $config_command .= $value eq 1? "--$flag "  : "--$flag $value ";
   }
 

diff --git a/modules/Bio/EnsEMBL/VEP/Constants.pm b/modules/Bio/EnsEMBL/VEP/Constants.pm
@@ -53,7 +53,7 @@ use warnings;
 use base qw(Exporter);
 
 our $VEP_VERSION     = 109;
-our $VEP_SUB_VERSION = 2;
+our $VEP_SUB_VERSION = 3;
 
 our @EXPORT_OK = qw(
   @FLAG_FIELDS