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@HUBioDataLab

Hacettepe University Biological Data Science Laboratory

An academic research laboratory focusing on machine/deep learning applications in the fields of bioinformatics and cheminformatics

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  1. SELFormer SELFormer Public

    SELFormer: Molecular Representation Learning via SELFIES Language Models

    Python 73 14

  2. DrugGEN DrugGEN Public

    Official implementation of DrugGEN

    Python 49 15

  3. ProtBENCH ProtBENCH Public

    Forked from hevalatas/ProtBENCH

    Python 11 2

  4. DrugApp DrugApp Public

    Forked from fulyaciray/DrugApp

    Python 7

  5. CROssBARv2 CROssBARv2 Public

    This is a repo for migration of CROssBAR data to the Neo4j database via BioCypher

    Python 5 7

  6. awesome-denovo-papers awesome-denovo-papers Public

    Forked from asarigun/awesome-denovo-papers

    Awesome De novo drugs design papers

    4

Repositories

Showing 10 of 24 repositories
  • crossbar-website Public
    HUBioDataLab/crossbar-website’s past year of commit activity
    JavaScript 0 0 0 0 Updated Oct 5, 2024
  • CROssBAR_LLM Public
    HUBioDataLab/CROssBAR_LLM’s past year of commit activity
    Python 2 0 0 0 Updated Oct 3, 2024
  • crossbar-graphql Public
    HUBioDataLab/crossbar-graphql’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Oct 3, 2024
  • SELFormer Public

    SELFormer: Molecular Representation Learning via SELFIES Language Models

    HUBioDataLab/SELFormer’s past year of commit activity
    Python 73 14 2 0 Updated Sep 11, 2024
  • CROssBAR-pypath Public Forked from saezlab/pypath

    Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

    HUBioDataLab/CROssBAR-pypath’s past year of commit activity
    Python 0 GPL-3.0 46 0 0 Updated Sep 4, 2024
  • Prot2Mol Public

    Target based molecule generation using protein embeddings and SELFIES molecule representation

    HUBioDataLab/Prot2Mol’s past year of commit activity
    Python 0 GPL-3.0 2 0 0 Updated Sep 2, 2024
  • DeepResponse Public Forked from burakcan-izmirli/DeepResponse

    DeepResponse: Large Scale Prediction of Cancer Cell Line Drug Response with Deep Learning Based Pharmacogenomic Modelling

    HUBioDataLab/DeepResponse’s past year of commit activity
    Python 0 3 0 0 Updated Aug 25, 2024
  • DEEPScreen2 Public Forked from stolyassa/DEEPScreen2
    HUBioDataLab/DEEPScreen2’s past year of commit activity
    Jupyter Notebook 0 5 0 7 Updated Aug 13, 2024
  • Domain2GO Public Forked from ervau/Domain2GO

    A Python tool for predicting protein functions by associating domains with Gene Ontology terms using existing domain and GO annotation data

    HUBioDataLab/Domain2GO’s past year of commit activity
    Python 1 1 0 0 Updated Aug 12, 2024
  • DrugGEN Public

    Official implementation of DrugGEN

    HUBioDataLab/DrugGEN’s past year of commit activity
    Python 49 GPL-3.0 15 2 2 Updated Jul 31, 2024
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