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Merge pull request #23 from TanguyBarthelemy/master
update gha and lint
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| Original file line number | Diff line number | Diff line change |
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| ^docs$ | ||
| ^_pkgdown\.yml$ | ||
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| ^.*\.Rproj$ | ||
| ^\.Rproj\.user$ | ||
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| ^\.git$ | ||
| ^\.github$ | ||
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| ^README\.Rmd$ | ||
| ^README-.*\.png$ | ||
| .travis.yml | ||
| ^pkgdown$ | ||
| ^doc$ | ||
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| ^Meta$ | ||
| ^NEWS.html$ | ||
| ^TO_DO$ | ||
| ^docs$ | ||
| ^doc$ | ||
| ^pkgdown$ | ||
| ^_pkgdown\.yml$ | ||
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| ^\.lintr$ | ||
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| ^appveyor\.yml$ | ||
| .travis.yml | ||
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| cran-comments.md | ||
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| ^\.DS_Store$ | ||
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| ^revdep$ | ||
| ^reconf\.sh$ | ||
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| ^LICENCE$ | ||
| ^LICENSE$ | ||
| ^.github$ | ||
| .lintr |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| name: Check changelog | ||
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| on: [ push, pull_request ] | ||
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| jobs: | ||
| check-changelog-job: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| with: | ||
| submodules: true | ||
| fetch-depth: 0 | ||
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| - uses: jbangdev/jbang-action@v0.115.0 | ||
| with: | ||
| script: com.github.nbbrd.heylogs:heylogs-cli:0.7.2:bin | ||
| scriptargs: "check NEWS.md" |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,139 @@ | ||
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| issue_comment: | ||
| types: [created] | ||
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| name: Commands | ||
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| jobs: | ||
| document: | ||
| if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/document') }} | ||
| name: document | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
|
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| - uses: r-lib/actions/setup-pandoc@v2 | ||
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| - uses: r-lib/actions/pr-fetch@v2 | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
|
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| - uses: actions/setup-java@v4 | ||
| with: | ||
| distribution: 'zulu' # See 'Supported distributions' for available options | ||
| java-version: '17' | ||
|
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| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| use-public-rspm: true | ||
|
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| - name: Set up for RProtoBuf | ||
| run: sudo apt-get update -y && sudo apt-get install protobuf-compiler libprotobuf-dev libprotoc-dev | ||
|
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| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| extra-packages: any::roxygen2 | ||
| needs: pr-document | ||
|
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| - name: Document | ||
| run: roxygen2::roxygenise() | ||
| shell: Rscript {0} | ||
|
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| - name: Config git | ||
| run: | | ||
| git config --local user.name "$GITHUB_ACTOR" | ||
| git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com" | ||
| # Check if there are any changes | ||
| - name: Check for changes | ||
| id: check-changes | ||
| run: | | ||
| if git diff --quiet -- NAMESPACE man/; then | ||
| echo "has-changed=false" >> "$GITHUB_OUTPUT" | ||
| else | ||
| echo "has-changed=true" >> "$GITHUB_OUTPUT" | ||
| fi | ||
| - name: Commit the changes | ||
| if: ${{ steps.check-changes.outputs.has-changed == 'true' }} | ||
| run: | | ||
| git add man/\* NAMESPACE | ||
| git commit -m '[GHA] Document package' | ||
| # Commit changes or a placeholder commit if no changes | ||
| - name: Commit no changes | ||
| if: ${{ steps.check-changes.outputs.has-changed == 'false' }} | ||
| run: | | ||
| git commit --allow-empty -m '[GHA] Package already documented' | ||
| - uses: r-lib/actions/pr-push@v2 | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
|
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| style: | ||
| if: ${{ github.event.issue.pull_request && (github.event.comment.author_association == 'MEMBER' || github.event.comment.author_association == 'OWNER') && startsWith(github.event.comment.body, '/style') }} | ||
| name: style | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
|
|
||
| - uses: r-lib/actions/pr-fetch@v2 | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
|
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||
| - uses: actions/setup-java@v4 | ||
| with: | ||
| distribution: 'zulu' # See 'Supported distributions' for available options | ||
| java-version: '17' | ||
|
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||
| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| use-public-rspm: true | ||
|
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| - name: Set up for RProtoBuf | ||
| run: sudo apt-get update -y && sudo apt-get install protobuf-compiler libprotobuf-dev libprotoc-dev | ||
|
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| - name: Install dependencies | ||
| run: install.packages("styler") | ||
| shell: Rscript {0} | ||
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| - name: Style | ||
| run: styler::style_pkg(transformers = styler::tidyverse_style(indent_by = 4)) | ||
| shell: Rscript {0} | ||
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| - name: Config git | ||
| run: | | ||
| git config --local user.name "$GITHUB_ACTOR" | ||
| git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com" | ||
| # Check if there are any changes | ||
| - name: Check for changes | ||
| id: check-changes | ||
| run: | | ||
| if git diff --quiet -- '*.R'; then | ||
| echo "has-changed=false" >> "$GITHUB_OUTPUT" | ||
| else | ||
| echo "has-changed=true" >> "$GITHUB_OUTPUT" | ||
| fi | ||
| - name: Commit the changes | ||
| if: ${{ steps.check-changes.outputs.has-changed == 'true' }} | ||
| run: | | ||
| git add \*.R | ||
| git commit -m '[GHA] Style package' | ||
| # Commit changes or a placeholder commit if no changes | ||
| - name: Commit no changes | ||
| if: ${{ steps.check-changes.outputs.has-changed == 'false' }} | ||
| run: | | ||
| git commit --allow-empty -m '[GHA] Package already styled' | ||
| - uses: r-lib/actions/pr-push@v2 | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,54 @@ | ||
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| workflow_dispatch | ||
|
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| name: test-coverage | ||
|
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| jobs: | ||
| test-coverage: | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
|
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| steps: | ||
| - uses: actions/checkout@v4 | ||
|
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| - uses: r-lib/actions/setup-pandoc@v2 | ||
|
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||
| - uses: actions/setup-java@v4 | ||
| with: | ||
| distribution: 'zulu' # See 'Supported distributions' for available options | ||
| java-version: '17' | ||
|
|
||
| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| use-public-rspm: true | ||
|
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| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| extra-packages: any::covr | ||
| needs: coverage | ||
|
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| - name: Test coverage | ||
| run: | | ||
| covr::codecov( | ||
| quiet = FALSE, | ||
| clean = FALSE, | ||
| install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") | ||
| ) | ||
| shell: Rscript {0} | ||
|
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| - name: Show testthat output | ||
| if: always() | ||
| run: | | ||
| ## -------------------------------------------------------------------- | ||
| find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
| shell: bash | ||
|
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| - name: Upload test results | ||
| if: failure() | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: coverage-test-failures | ||
| path: ${{ runner.temp }}/package |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,55 @@ | ||
| .Rproj.user | ||
| # History files | ||
| .Rhistory | ||
| .Rapp.history | ||
|
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| # Session Data files | ||
| .RData | ||
| /doc/ | ||
| /Meta/ | ||
| .RDataTmp | ||
|
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| # User-specific files | ||
| .Ruserdata | ||
|
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| # Example code in package build process | ||
| *-Ex.R | ||
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| # Output files from R CMD build | ||
| /*.tar.gz | ||
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| # Output files from R CMD check | ||
| /*.Rcheck/ | ||
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| # RStudio files | ||
| .Rproj.user/ | ||
|
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| # produced vignettes | ||
| vignettes/*.html | ||
| vignettes/*.pdf | ||
| Meta/ | ||
| inst/doc/ | ||
| doc/ | ||
|
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| # OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3 | ||
| .httr-oauth | ||
|
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| # knitr and R markdown default cache directories | ||
| *_cache/ | ||
| /cache/ | ||
|
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| # Temporary files created by R markdown | ||
| *.utf8.md | ||
| *.knit.md | ||
|
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| # R Environment Variables | ||
| .Renviron | ||
|
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| # pkgdown site | ||
| docs/ | ||
|
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| # translation temp files | ||
| po/*~ | ||
|
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| # RStudio Connect folder | ||
| rsconnect/ | ||
|
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| TO_DO | ||
| # Hidden file from mac-os | ||
| .DS_Store |
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