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New package: VCF v0.5.0 #30036

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UUID: 4aa32d9a-e79d-4ae2-bc49-73d041a2fde6
Repo: https://github.com/rasmushenningsson/VCF.jl.git
Tree: 3590e4ddd35c0aae9773f6551c81f0b1d365e40c

Registrator tree SHA: e934b8c55381f28735124f23e8f7e96d09b20416
JuliaRegistrator referenced this pull request in rasmushenningsson/VariantCallFormat.jl Feb 14, 2021
@JuliaRegistrator JuliaRegistrator temporarily deployed to stopwatch February 14, 2021 08:12 Inactive
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Your new package pull request does not meet the guidelines for auto-merging. Please make sure that you have read the General registry README. The following guidelines were not met:

  • Name does not meet all of the following: starts with an uppercase letter, ASCII alphanumerics only, not all letters are uppercase.
  • Name is not at least five characters long
  • Package name similar to 15 existing packages.
Similar package names
  1. Similar to VSL. Damerau-Levenshtein distance 2 is at or below cutoff of 2.
  2. Similar to VQC. Damerau-Levenshtein distance 2 is at or below cutoff of 2.
  3. Similar to GCP. Damerau-Levenshtein distance 2 is at or below cutoff of 2.
  4. Similar to XDF. Damerau-Levenshtein distance 2 is at or below cutoff of 2.
  5. Similar to XCB. Damerau-Levenshtein distance 2 is at or below cutoff of 2.
  6. Similar to JDF. Damerau-Levenshtein distance 2 is at or below cutoff of 2.
  7. Similar to BDF. Damerau-Levenshtein distance 2 is at or below cutoff of 2.
  8. Similar to EDF. Damerau-Levenshtein distance 2 is at or below cutoff of 2.
  9. Similar to UCX. Damerau-Levenshtein distance 2 is at or below cutoff of 2.
  10. Similar to WCS. Damerau-Levenshtein distance 2 is at or below cutoff of 2.
  11. Similar to SCS. Damerau-Levenshtein distance 2 is at or below cutoff of 2.
  12. Similar to ECC. Damerau-Levenshtein distance 2 is at or below cutoff of 2.
  13. Similar to TCX. Damerau-Levenshtein distance 2 is at or below cutoff of 2.
  14. Similar to NMF. Damerau-Levenshtein distance 2 is at or below cutoff of 2.
  15. Similar to FCA. Damerau-Levenshtein distance 2 is at or below cutoff of 2.

Note that the guidelines are only required for the pull request to be merged automatically. However, it is strongly recommended to follow them, since otherwise the pull request needs to be manually reviewed and merged by a human.

After you have fixed the AutoMerge issues, simple retrigger Registrator, which will automatically update this pull request. You do not need to change the version number in your Project.toml file (unless of course the AutoMerge issue is that you skipped a version number, in which case you should change the version number).

If you do not want to fix the AutoMerge issues, please post a comment explaining why you would like this pull request to be manually merged.

Since you are registering a new package, please make sure that you have also read the package naming guidelines: https://julialang.github.io/Pkg.jl/dev/creating-packages/#Package-naming-guidelines-1


If you want to prevent this pull request from being auto-merged, simply leave a comment. If you want to post a comment without blocking auto-merging, you must include the text [noblock] in your comment.

@rasmushenningsson
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If a longer name for this package is desired, it would be VariantCallFormat.jl. I do however think that VCF.jl is more appropriate.

  • VCF files are used a lot in bioinformatics and that's the term that people use. Fewer people would recognize Variant Call Format.
  • 99.9% of user who need this package already have VCF files produced by other tools. So VCF.j is the natural package name to search for.
  • Several other package names, like CSV.jl and XLSX.jl use the file extension as the package name.

Previously, VCF file IO existed in the not actively maintained package GeneticVariation.jl. It makes more sense to have it in a separate package, with fewer dependencies.
Since VCF.jl is building on GeneticVariation.jl v0.4, I choose v0.5 as the starting version number for VCF.jl.

@rasmushenningsson
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It is likely that I will close this pull request, change the name to VariantCallFormat.jl and re-register.
I'll leave it open for a while longer to gather more comments though.

@rasmushenningsson
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This pull request is no longer valid. I'm changing the name of the package to VariantCallFormat.jl.

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3 participants