Merge branch 'master' into ms2deepscore

RECETOX · Aug 16, 2024 · 8d4d69f · 8d4d69f
2 parents ee42405 + e3ad09c
commit 8d4d69f
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Showing 3 changed files with 8 additions and 4 deletions.
diff --git a/test_biocontainers.sh b/test_biocontainers.sh
@@ -0,0 +1,4 @@
+for d in tools/*/
+do
+(cd "$d" && planemo test --biocontainers .)
+done
diff --git a/tools/mfassignr/macros.xml b/tools/mfassignr/macros.xml
@@ -68,9 +68,9 @@
     <xml name="snplot_param">
         <param name="input_file" type="data" format="tabular" label="Input data"
                help= "Input data frame, first column is mass, second column is intensity"/>
-        <param name="cut" type="float" label="cut"
+        <param name="cut" type="float" label="cut" value="0"
                help= "A numeric value of the intensity cut value being investigated"/>
-        <param name="mass" type="float" label="mass"
+        <param name="mass" type="float" label="mass" value="300"
                help= "A numeric value setting a centerpoint to look at the mass spectrum"/>
         <param name="window_x" type="float" label="window.x" value="0.5"
                help= "A numeric value setting the +/- range around the mass centerpoint, default is 0.5"/>

diff --git a/tools/mfassignr/mfassignr_snplot.xml b/tools/mfassignr/mfassignr_snplot.xml
@@ -1,4 +1,4 @@
-<tool id="mfassignr_snplot" name="MFAssignR SNplot" version="@TOOL_VERSION@+galaxy0" profile="23.0">
+<tool id="mfassignr_snplot" name="MFAssignR SNplot" version="@TOOL_VERSION@+galaxy1" profile="23.0">
     <description>Noise level assessment using the SNplot function.</description>
     <macros>
         <import>macros.xml</import>
@@ -45,4 +45,4 @@
         @GENERAL_HELP@
     ]]></help>
     <expand macro="citations" />
-</tool>
+</tool>