setup: bump dclab to 0.61.3 (replace rpy2 with wrapper) (close #73, c… #518
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| name: Checks | |
| on: | |
| push: | |
| pull_request: | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.10'] | |
| os: [macos-12, ubuntu-latest, windows-latest] | |
| env: | |
| # Display must be available globally for linux to know where xvfb is | |
| DISPLAY: :0 | |
| steps: | |
| - uses: actions/checkout@main | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@main | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Setup xvfb (Linux) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get install -y xvfb libxkbcommon-x11-0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-shape0 libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0 | |
| # start xvfb in the background | |
| sudo /usr/bin/Xvfb $DISPLAY -screen 0 1280x1024x24 & | |
| - name: install R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: '4.1.2' | |
| - name: Install R packages for lme4 | |
| if: matrix.extras == 'all' | |
| shell: bash | |
| run: | | |
| R --version | |
| R -e "install.packages(c('statmod','nloptr','lme4'),repos='http://cran.rstudio.org')" | |
| - name: Install Python dependencies | |
| run: | | |
| # prerequisites | |
| python -m pip install --upgrade pip wheel | |
| python -m pip install coverage flake8 | |
| # install dependencies | |
| pip install . | |
| pip install -r tests/requirements.txt | |
| # show installed packages | |
| pip freeze | |
| - name: Start application and print version | |
| env: | |
| # Display must be available globally for linux to know where xvfb is | |
| QT_DEBUG_PLUGINS: 1 | |
| run: | | |
| python -m shapeout2 --version | |
| - name: Test with pytest | |
| env: | |
| # github token required for testing update.py | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| coverage run --source=shapeout2 -m pytest -x tests | |
| - name: Lint with flake8 | |
| run: | | |
| flake8 --exclude _version.py . | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Create app and check if it runs (macOS) | |
| if: runner.os == 'macOS' | |
| working-directory: ./build-recipes | |
| run: | | |
| bash ./macos_build_app.sh ShapeOut2 $(python -m shapeout2 --version) |