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0.12.0
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@ghuls ghuls released this 02 Sep 12:33
· 36 commits to master since this release
0.12.0
31e8d2f

Updates:

  • Only databases in Feather v2 format are supported now (ctxcore >= 0.2), which allow uses recent versions of pyarrow (>=8.0.0) instead of very old ones (<0.17). Databases in the new format can be downloaded from https://resources.aertslab.org/cistarget/databases/ and end with *.genes_vs_motifs.rankings.feather or *.genes_vs_tracks.rankings.feather.
  • Support clustered motif databases.
  • Use custom multiprocessing instead of dask, by default.
  • Docker image uses python 3.10 and contains only needed pySCENIC dependencies for CLI usage.
  • Remove unneeded scripts and notebooks for unused/deprecated database formats.
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