v1.5

Changes

• Aggregation & QC workflow now uses gcr.io/aryeelab/bismark docker
• Fixed QC report config that led to an error with recent Pandoc releases
• Changed name of aggregation Bsseq dir and object to 'bsseq' from outputdir_final
• Added aggregate_bismark.wdl workflow to .dockstore.yml
• Added a basic log
• Use default dir instead of /tmp as workdir. (/tmp was used as a workaround for a Mac Docker overmount issue)

v1.4

Changes

• Merged WGBS and RRBS workflows into the same WDL

v1.3

Changes

• Upgraded Bismark to v0.22.3, Bowtie2 to v2.4.2 and TrimGalore to v0.6.5
• Use layer caching to speed up Google Cloud docker builds
• Use text from Docker container /VERSION file as pipeline version output

v1.2.1

Changes

• Added .dockstore.yml for Dockstore integration

v1.2

Changes

• Allow no read trimming (n_bp_trim_read1=0, n_bp_trim_read2=0)

v1.1

Changes:

• Upgraded bismark docker to ubuntu:20.04
• Bismark docker images are now automatically built by Google Cloud Build and hosted in Google Container Registry
• WGBS pipeline now uses versioned docker images (latest or release tag)
• Cleaned up WGBS pipeline and renamed/simplified outputs

v1.0

First release