feat(ingest): enable stateful ingestion safety threshold

metadata-ingestion/src/datahub/cli/state_cli.py

@@ -34,4 +34,5 @@ def inspect(pipeline_name: str, platform: str) -> None:
         click.secho("No ingestion state found.", fg="red")
         exit(1)
 
+    logger.info(f"Found ingestion state with {len(checkpoint.state.urns)} URNs.")
     click.echo(json.dumps(checkpoint.state.urns, indent=2))

metadata-ingestion/src/datahub/ingestion/source/dbt/dbt_common.py

@@ -1414,7 +1414,7 @@ def create_target_platform_mces(
                     yield MetadataChangeProposalWrapper(
                         entityUrn=node_datahub_urn,
                         aspect=upstreams_lineage_class,
-                    ).as_workunit()
+                    ).as_workunit(is_primary_source=False)
 
     def extract_query_tag_aspects(
         self,

metadata-ingestion/src/datahub/ingestion/source/state/stale_entity_removal_handler.py

@@ -37,7 +37,7 @@ class StatefulStaleMetadataRemovalConfig(StatefulIngestionConfig):
         description="Soft-deletes the entities present in the last successful run but missing in the current run with stateful_ingestion enabled.",
     )
     fail_safe_threshold: float = pydantic.Field(
-        default=100.0,
+        default=40.0,
         description="Prevents large amount of soft deletes & the state from committing from accidental changes to the source configuration if the relative change percent in entities compared to the previous state is above the 'fail_safe_threshold'.",
         le=100.0,
         ge=0.0,
@@ -224,6 +224,8 @@ def gen_removed_entity_workunits(self) -> Iterable[MetadataWorkUnit]:
 
         assert self.stateful_ingestion_config
 
+        copy_previous_state_and_fail = False
+
         # Check if the entity delta is below the fail-safe threshold.
         entity_difference_percent = cur_checkpoint_state.get_percent_entities_changed(
             last_checkpoint_state
@@ -242,30 +244,32 @@ def gen_removed_entity_workunits(self) -> Iterable[MetadataWorkUnit]:
                 f"Will not soft-delete entities, since we'd be deleting {entity_difference_percent:.1f}% of the existing entities. "
                 f"To force a deletion, increase the value of 'stateful_ingestion.fail_safe_threshold' (currently {self.stateful_ingestion_config.fail_safe_threshold})",
             )
-            return
+            copy_previous_state_and_fail = True
 
         if self.source.get_report().events_produced == 0:
-            # SUBTLE: By reporting this as a failure here, we also ensure that the
-            # new (empty) state doesn't get committed.
-            # TODO: Move back to using fail_safe_threshold once we're confident that we've squashed all the bugs.
             self.source.get_report().report_failure(
                 "stale-entity-removal",
                 "Skipping stale entity soft-deletion because the source produced no events. "
                 "This is a fail-safe mechanism to prevent accidental deletion of all entities.",
             )
-            return
+            copy_previous_state_and_fail = True
 
         # If the source already had a failure, skip soft-deletion.
-        # TODO: Eventually, switch this to check if anything in the pipeline had a failure so far.
+        # TODO: Eventually, switch this to check if anything in the pipeline had a failure so far, not just the source.
         if self.source.get_report().failures:
-            for urn in last_checkpoint_state.get_urns_not_in(
-                type="*", other_checkpoint_state=cur_checkpoint_state
-            ):
-                self.add_entity_to_state("", urn)
             self.source.get_report().report_warning(
                 "stale-entity-removal",
-                "Skipping stale entity soft-deletion and coping urns from last state since source already had failures.",
+                "Skipping stale entity soft-deletion and copying urns from last state since source already had failures.",
             )
+            copy_previous_state_and_fail = True
+
+        if copy_previous_state_and_fail:
+            logger.info(
+                f"Copying urns from last state (size {last_checkpoint_state.urns}) to current state (size {cur_checkpoint_state.urns}) "
+                "to ensure stale entities from previous runs are deleted on the next successful run."
+            )
+            for urn in last_checkpoint_state.urns:
+                self.add_entity_to_state("", urn)
             return
 
         # Everything looks good, emit the soft-deletion workunits

metadata-ingestion/tests/integration/dbt/dbt_test_with_non_incremental_lineage_mces_golden.json

@@ -4258,54 +4258,6 @@
         "lastRunId": "no-run-id-provided"
     }
 },
-{
-    "entityType": "dataset",
-    "entityUrn": "urn:li:dataset:(urn:li:dataPlatform:postgres,pagila.dbt_postgres.an-aliased-view-for-monthly-billing,PROD)",
-    "changeType": "UPSERT",
-    "aspectName": "status",
-    "aspect": {
-        "json": {
-            "removed": false
-        }
-    },
-    "systemMetadata": {
-        "lastObserved": 1643871600000,
-        "runId": "dbt-test-with-non-incremental-lineage",
-        "lastRunId": "no-run-id-provided"
-    }
-},
-{
-    "entityType": "dataset",
-    "entityUrn": "urn:li:dataset:(urn:li:dataPlatform:postgres,pagila.dbt_postgres.an-aliased-view-for-payments,PROD)",
-    "changeType": "UPSERT",
-    "aspectName": "status",
-    "aspect": {
-        "json": {
-            "removed": false
-        }
-    },
-    "systemMetadata": {
-        "lastObserved": 1643871600000,
-        "runId": "dbt-test-with-non-incremental-lineage",
-        "lastRunId": "no-run-id-provided"
-    }
-},
-{
-    "entityType": "dataset",
-    "entityUrn": "urn:li:dataset:(urn:li:dataPlatform:postgres,pagila.dbt_postgres.payments_by_customer_by_month,PROD)",
-    "changeType": "UPSERT",
-    "aspectName": "status",
-    "aspect": {
-        "json": {
-            "removed": false
-        }
-    },
-    "systemMetadata": {
-        "lastObserved": 1643871600000,
-        "runId": "dbt-test-with-non-incremental-lineage",
-        "lastRunId": "no-run-id-provided"
-    }
-},
 {
     "entityType": "tag",
     "entityUrn": "urn:li:tag:dbt:column_tag",