import checkmate #62
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| CHUNKEDGRAPH_SECRET: ${{ secrets.CHUNKEDGRAPH_SECRET }} | |
| RETICULATE_MINICONDA_PYTHON_VERSION: 3.8 | |
| RGL_USE_NULL: true | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| _R_CHECK_DONTTEST_EXAMPLES_: FALSE | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| _R_CHECK_TESTS_NLINES_: 0 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes", "rcmdcheck")) | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("covr") | |
| remotes::install_cran("pkgdown") | |
| shell: Rscript {0} | |
| - name: Fix Conda permissions on macOS | |
| if: runner.os == 'macOS' | |
| run: sudo chown -R $UID $CONDA | |
| - name: Install fafbseg + python | |
| run: | | |
| remotes::install_local() | |
| library(fafbseg) | |
| simple_python(pkgs="caveclient") | |
| dr_fafbseg() | |
| shell: Rscript {0} | |
| - name: writetoken | |
| run: fafbseg::flywire_set_token(token=Sys.getenv("CHUNKEDGRAPH_SECRET")) | |
| shell: Rscript {0} | |
| - name: Check | |
| run: | | |
| options(crayon.enabled = TRUE) | |
| rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error") | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Deploy package | |
| run: | | |
| git config --local user.email "actions@github.com" | |
| git config --local user.name "GitHub Actions" | |
| Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)' |