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Linting cpp/h files
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@favmd
favmd committed Aug 28, 2023
1 parent 91f1f23 commit 7d8d134
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Showing 11 changed files with 1,630 additions and 1,453 deletions.
308 changes: 169 additions & 139 deletions BlockVisualisation/block_visual.cpp
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Original file line number Diff line number Diff line change
@@ -1,157 +1,187 @@
#include "block_visual.h"
#include "layout.h"
#include "cluster.h"
#include "layout.h"

#include <map>



BlockVisual::BlockVisual(std::string file_settings = ""){
_settings = Settings();
if (file_settings != ""){
std::ifstream setfile(file_settings.c_str());
std::string str;
std::getline(setfile, str);std::getline(setfile, str);std::getline(setfile, str);std::getline(setfile, str);
_file_path_in = str;
std::getline(setfile, str);std::getline(setfile, str);
_file_path_out = str;
std::getline(setfile, str);std::getline(setfile, str);std::getline(setfile, str);
_settings.componentwise = std::stoi(str);
std::getline(setfile, str); std::getline(setfile, str);
_settings.iterations = std::stoi(str);
std::getline(setfile, str); std::getline(setfile, str);
_settings.edge_force = std::stod(str);
std::getline(setfile, str);std::getline(setfile, str);
_settings.gravity = std::stod(str);
std::getline(setfile, str);std::getline(setfile, str);
_settings.jitter_tol = std::stod(str);
std::getline(setfile, str);std::getline(setfile, str);
_settings.speed = std::stod(str);
std::getline(setfile, str);std::getline(setfile, str);
_settings.speed_efficiency = std::stod(str);
std::getline(setfile, str);std::getline(setfile, str);
_settings.layout_verbosity = std::stoi(str);
std::getline(setfile, str);std::getline(setfile, str);std::getline(setfile, str);
_settings.terms = std::stoi(str);
std::getline(setfile, str);std::getline(setfile, str);
_settings.thresh = std::stoi(str);
std::getline(setfile, str);std::getline(setfile, str);std::getline(setfile, str);
_settings.kk_edge_strength = std::stod(str);
std::getline(setfile, str);std::getline(setfile, str);
_settings.kk_thresh = std::stod(str);
std::getline(setfile, str);std::getline(setfile, str);
_settings.kk_iterations = std::stoi(str);
std::getline(setfile, str);std::getline(setfile, str);
_settings.kk_verbosity = std::stoi(str);
std::getline(setfile, str);std::getline(setfile, str);std::getline(setfile, str);
_settings.max_kamada_kawai_nodes = std::stoi(str);
}
BlockVisual::BlockVisual(std::string file_settings = "") {
_settings = Settings();
if (file_settings != "") {
std::ifstream setfile(file_settings.c_str());
std::string str;
std::getline(setfile, str);
std::getline(setfile, str);
std::getline(setfile, str);
std::getline(setfile, str);
_file_path_in = str;
std::getline(setfile, str);
std::getline(setfile, str);
_file_path_out = str;
std::getline(setfile, str);
std::getline(setfile, str);
std::getline(setfile, str);
_settings.componentwise = std::stoi(str);
std::getline(setfile, str);
std::getline(setfile, str);
_settings.iterations = std::stoi(str);
std::getline(setfile, str);
std::getline(setfile, str);
_settings.edge_force = std::stod(str);
std::getline(setfile, str);
std::getline(setfile, str);
_settings.gravity = std::stod(str);
std::getline(setfile, str);
std::getline(setfile, str);
_settings.jitter_tol = std::stod(str);
std::getline(setfile, str);
std::getline(setfile, str);
_settings.speed = std::stod(str);
std::getline(setfile, str);
std::getline(setfile, str);
_settings.speed_efficiency = std::stod(str);
std::getline(setfile, str);
std::getline(setfile, str);
_settings.layout_verbosity = std::stoi(str);
std::getline(setfile, str);
std::getline(setfile, str);
std::getline(setfile, str);
_settings.terms = std::stoi(str);
std::getline(setfile, str);
std::getline(setfile, str);
_settings.thresh = std::stoi(str);
std::getline(setfile, str);
std::getline(setfile, str);
std::getline(setfile, str);
_settings.kk_edge_strength = std::stod(str);
std::getline(setfile, str);
std::getline(setfile, str);
_settings.kk_thresh = std::stod(str);
std::getline(setfile, str);
std::getline(setfile, str);
_settings.kk_iterations = std::stoi(str);
std::getline(setfile, str);
std::getline(setfile, str);
_settings.kk_verbosity = std::stoi(str);
std::getline(setfile, str);
std::getline(setfile, str);
std::getline(setfile, str);
_settings.max_kamada_kawai_nodes = std::stoi(str);
}
}

void write_particles(std::vector<Particle> _particles, int component,
std::string filename) {

void write_particles(std::vector<Particle> _particles, int component, std::string filename){

if (component == -1){
std::ofstream myfile;
myfile.open((filename+".txt").c_str(), std::ios::out|std::ios::trunc);
for (Particle p: _particles){myfile << p.get_pos().real() << "|" << p.get_pos().imag() << std::endl;}
myfile.close();
} else {
std::ofstream myfile;
myfile.open((filename+".txt").c_str(), std::ios::out|std::ios::app);
int p_index=0;
for (Particle p: _particles){myfile <<component << "|" << p.get_pos().real() << "|" << p.get_pos().imag() << std::endl;p_index++;}
myfile.close();
if (component == -1) {
std::ofstream myfile;
myfile.open((filename + ".txt").c_str(), std::ios::out | std::ios::trunc);
for (Particle p : _particles) {
myfile << p.get_pos().real() << "|" << p.get_pos().imag() << std::endl;
}

};

void write_positions(std::vector<Compl> _positions, std::string filename){


myfile.close();
} else {
std::ofstream myfile;
myfile.open((filename+".txt").c_str());
for (Compl p: _positions){myfile<< p.real() << "|" << p.imag() << std::endl;}
myfile.open((filename + ".txt").c_str(), std::ios::out | std::ios::app);
int p_index = 0;
for (Particle p : _particles) {
myfile << component << "|" << p.get_pos().real() << "|"
<< p.get_pos().imag() << std::endl;
p_index++;
}
myfile.close();

}
};

void write_positions(std::vector<Compl> _positions, std::string filename) {

void BlockVisual::calc_visual(){
std::string type = "standard";
if (_file_path_in.find("gml") != std::string::npos) {
type="gml";
}
Graph big_graph = Graph(type, _file_path_in);


LayoutGraph l;

std::tuple<std::vector<Graph>, std::unordered_map<int, int>, std::vector<int>> components = big_graph.get_components();
std::vector<Graph> graphs = std::get<0>(components);
std::unordered_map<int, int> new_id = std::get<1>(components);
std::vector<int> component_vec = std::get<2>(components);

std::vector<std::vector<Compl>> component_positions;

for (auto graph: graphs){

ClusterGraph CL = ClusterGraph(graph);
Graph g = CL.get_graph();
if (g.num_vertices()<_settings.max_kamada_kawai_nodes){
//l.calc_kamada_kawai(g, 10000, 0.0001, 200, 2);
l.calc_kamada_kawai(g, _settings.kk_edge_strength, _settings.kk_thresh, _settings.kk_iterations,_settings.kk_verbosity);
std::vector<Compl> clustered_layout;
for (auto p: g.get_particles()){
clustered_layout.push_back(p.get_pos());
}
component_positions.push_back(clustered_layout);
}else{
l.calc_fa2(g, _settings.iterations, _settings.terms, _settings.thresh,_settings.edge_force, _settings.gravity, _settings.jitter_tol, _settings.speed, _settings.speed_efficiency, _settings.layout_verbosity);

//CL.cluster_leaves();
//CL.cluster_bridges();
//CL.cluster_central_node(4);

std::vector<Compl> clustered_layout;
double mean_edge = 0;
for (auto e: g.get_edges()){
mean_edge+=std::abs(g.get_particles()[e.source].get_pos()-g.get_particles()[e.target].get_pos());
}
mean_edge /= g.num_edges();
for (auto p: g.get_particles()){
clustered_layout.push_back(p.get_pos()/mean_edge);
}
component_positions.push_back(clustered_layout);
//std::vector<Compl> decluster_positions = CL.get_unclustered_layout(clustered_layout);
}



}
std::ofstream myfile;
myfile.open((filename + ".txt").c_str());
for (Compl p : _positions) {
myfile << p.real() << "|" << p.imag() << std::endl;
}
myfile.close();
};

component_positions = l.calc_many_components_layout(component_positions, component_positions.size()*15, 250);
std::vector<Compl> positions;
for (int id=0;id<big_graph.num_vertices();id++){
positions.push_back(component_positions[component_vec[id]][new_id[id]]);
void BlockVisual::calc_visual() {
std::string type = "standard";
if (_file_path_in.find("gml") != std::string::npos) {
type = "gml";
}
Graph big_graph = Graph(type, _file_path_in);

LayoutGraph l;

std::tuple<std::vector<Graph>, std::unordered_map<int, int>, std::vector<int>>
components = big_graph.get_components();
std::vector<Graph> graphs = std::get<0>(components);
std::unordered_map<int, int> new_id = std::get<1>(components);
std::vector<int> component_vec = std::get<2>(components);

std::vector<std::vector<Compl>> component_positions;

for (auto graph : graphs) {

ClusterGraph CL = ClusterGraph(graph);
Graph g = CL.get_graph();
if (g.num_vertices() < _settings.max_kamada_kawai_nodes) {
// l.calc_kamada_kawai(g, 10000, 0.0001, 200, 2);
l.calc_kamada_kawai(g, _settings.kk_edge_strength, _settings.kk_thresh,
_settings.kk_iterations, _settings.kk_verbosity);
std::vector<Compl> clustered_layout;
for (auto p : g.get_particles()) {
clustered_layout.push_back(p.get_pos());
}
component_positions.push_back(clustered_layout);
} else {
l.calc_fa2(g, _settings.iterations, _settings.terms, _settings.thresh,
_settings.edge_force, _settings.gravity, _settings.jitter_tol,
_settings.speed, _settings.speed_efficiency,
_settings.layout_verbosity);

// CL.cluster_leaves();
// CL.cluster_bridges();
// CL.cluster_central_node(4);

std::vector<Compl> clustered_layout;
double mean_edge = 0;
for (auto e : g.get_edges()) {
mean_edge += std::abs(g.get_particles()[e.source].get_pos() -
g.get_particles()[e.target].get_pos());
}
mean_edge /= g.num_edges();
for (auto p : g.get_particles()) {
clustered_layout.push_back(p.get_pos() / mean_edge);
}
component_positions.push_back(clustered_layout);
// std::vector<Compl> decluster_positions =
// CL.get_unclustered_layout(clustered_layout);
}
write_positions(positions, _file_path_out);
}

component_positions = l.calc_many_components_layout(
component_positions, component_positions.size() * 15, 250);
std::vector<Compl> positions;
for (int id = 0; id < big_graph.num_vertices(); id++) {
positions.push_back(component_positions[component_vec[id]][new_id[id]]);
}
write_positions(positions, _file_path_out);
}


void BlockVisual::fa2_visual(){
std::string type = "standard";
if (_file_path_in.find("gml") != std::string::npos) {
type="gml";
}
Graph big_graph = Graph(type, _file_path_in);


LayoutGraph l;
l.calc_fa2(big_graph, _settings.iterations, _settings.terms, _settings.thresh,_settings.edge_force, _settings.gravity, _settings.jitter_tol, _settings.speed, _settings.speed_efficiency, _settings.layout_verbosity);
std::vector<Compl> positions;
for (auto p: big_graph.get_particles()){
positions.push_back(p.get_pos());
}
write_positions(positions, _file_path_out);
};
void BlockVisual::fa2_visual() {
std::string type = "standard";
if (_file_path_in.find("gml") != std::string::npos) {
type = "gml";
}
Graph big_graph = Graph(type, _file_path_in);

LayoutGraph l;
l.calc_fa2(big_graph, _settings.iterations, _settings.terms, _settings.thresh,
_settings.edge_force, _settings.gravity, _settings.jitter_tol,
_settings.speed, _settings.speed_efficiency,
_settings.layout_verbosity);
std::vector<Compl> positions;
for (auto p : big_graph.get_particles()) {
positions.push_back(p.get_pos());
}
write_positions(positions, _file_path_out);
};
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