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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Python

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 12 2

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 4

Repositories

Showing 10 of 172 repositories
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui’s past year of commit activity
    TypeScript 12 MIT 2 200 31 Updated Oct 8, 2024
  • ingest-validation-tools Public

    HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

    hubmapconsortium/ingest-validation-tools’s past year of commit activity
    Python 8 MIT 18 41 10 Updated Oct 8, 2024
  • ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    hubmapconsortium/ingest-pipeline’s past year of commit activity
    Python 4 MIT 4 79 16 Updated Oct 8, 2024
  • salmon-rnaseq Public

    scRNA-seq pipeline using Salmon for quantification

    hubmapconsortium/salmon-rnaseq’s past year of commit activity
    Python 3 GPL-3.0 5 5 3 Updated Oct 8, 2024
  • search-api Public

    HuBMAP search service and associated pieces to create an index

    hubmapconsortium/search-api’s past year of commit activity
    Python 2 MIT 2 56 1 Updated Oct 8, 2024
  • antibody-api Public

    API for the Antibody DB.

    hubmapconsortium/antibody-api’s past year of commit activity
    Python 0 0 30 1 Updated Oct 8, 2024
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui’s past year of commit activity
    TypeScript 4 MIT 2 106 7 Updated Oct 8, 2024
  • ingest-api Public
    hubmapconsortium/ingest-api’s past year of commit activity
    Python 0 MIT 0 17 1 Updated Oct 8, 2024
  • entity-api Public

    A set of web service calls to return information about HuBMAP entities

    hubmapconsortium/entity-api’s past year of commit activity
    Python 3 MIT 1 62 0 Updated Oct 8, 2024
  • portal-containers Public

    Docker containers to pre-process data for visualization in the portal

    hubmapconsortium/portal-containers’s past year of commit activity
    Python 0 MIT 1 22 (1 issue needs help) 27 Updated Oct 8, 2024
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