postie

Use postie to post-process malariasimulation model output.

Postie requires are few conventions to work:

1. that age-bands for clinical and severe incidence must be the same. In practice this means you will need to set, for example:

year <- 365
min_ages <- year * 0:99
max_ages <- year * 1:100
parameters$clinical_incidence_rendering_min_ages = min_ages
parameters$clinical_incidence_rendering_max_ages = max_ages
parameters$severe_incidence_rendering_min_ages = min_ages
parameters$severe_incidence_rendering_max_ages = max_ages

2. that ft (treatment coverage) is an output variable. This will most likely be a result of setting treatment in the simulation, for example:

parameters |>
malariasimulation::set_drugs(list(malariasimulation::AL_params)) |>
malariasimulation::set_clinical_treatment(1, 50, 0.5)

alternatively, if no treatment is implemented, you could just add ft = 0 to the simulation output before using postie.