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Important! Template update for nf-core/tools v2.12 #73

Merged
merged 5 commits into from
Feb 13, 2024
Merged

Important! Template update for nf-core/tools v2.12 #73

merged 5 commits into from
Feb 13, 2024

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nf-core-bot
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Version 2.12 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-2.12 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/docs/contributing/sync/.

For more information about this release of nf-core/tools, please see the v2.12 release page.

@nf-core-bot nf-core-bot mentioned this pull request Jan 29, 2024
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github-actions bot commented Feb 13, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 4d695ce

+| ✅ 170 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗   3 tests had warnings |!

❗ Test warnings:

  • nextflow_config - Config manifest.version should end in dev: 2.1.0
  • pipeline_todos - TODO string in main.nf: Remove this line if you don't need a FASTA file
  • pipeline_todos - TODO string in WorkflowBamtofastq.groovy: Optionally add in-text citation tools to this list.

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: .github/CONTRIBUTING.md

✅ Tests passed:

Run details

  • nf-core/tools version 2.12.1
  • Run at 2024-02-13 19:47:58

FriederikeHanssen
FriederikeHanssen approved these changes Feb 13, 2024
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thank you

@maxulysse maxulysse merged commit 1543f81 into dev Feb 13, 2024
18 checks passed
@maxulysse maxulysse deleted the nf-core-template-merge-2.12 branch February 13, 2024 19:50
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@maxulysse maxulysse maxulysse approved these changes

@FriederikeHanssen FriederikeHanssen FriederikeHanssen approved these changes

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@nf-core-bot @maxulysse @FriederikeHanssen