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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 8 3

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 3

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 228 repositories
  • biomodalQC Public

    QC workflow for biomodal pipeline

    oicr-gsi/biomodalQC’s past year of commit activity
    WDL 0 0 0 0 Updated Oct 9, 2024
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 9 GPL-3.0 3 4 5 Updated Oct 8, 2024
  • bclconvert Public

    Workflow to process a run directory through Dragen bclconvert

    oicr-gsi/bclconvert’s past year of commit activity
    WDL 0 0 0 1 Updated Oct 8, 2024
  • bamToFastq Public

    Generate R1 and R2

    oicr-gsi/bamToFastq’s past year of commit activity
    WDL 0 0 0 0 Updated Oct 8, 2024
  • shesmu Public

    Decision-driven action launching system

    oicr-gsi/shesmu’s past year of commit activity
    Java 8 MIT 3 0 0 Updated Oct 8, 2024
  • flask_ui Public

    projectconfig UI

    oicr-gsi/flask_ui’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 7, 2024
  • cardea Public

    Case data API

    oicr-gsi/cardea’s past year of commit activity
    Java 0 Apache-2.0 0 0 1 Updated Oct 3, 2024
  • dashi Public

    Python Dash visualization of OICR QC data

    oicr-gsi/dashi’s past year of commit activity
    Python 4 MIT 2 0 1 Updated Oct 3, 2024
  • Nextflow_WG_pipeline Public
    oicr-gsi/Nextflow_WG_pipeline’s past year of commit activity
    Nextflow 0 0 0 0 Updated Oct 3, 2024
  • mrdetect Public

    workflow to detect Minimal Residual disease with MRDetect

    oicr-gsi/mrdetect’s past year of commit activity
    WDL 0 0 1 0 Updated Sep 30, 2024
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