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pr-checks: run hdf5 testsuite #12855

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pr-checks: run hdf5 testsuite #12855

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62 changes: 62 additions & 0 deletions .github/workflows/hdf5-tests.yaml
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Original file line number Diff line number Diff line change
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name: HDF5

on: [pull_request]

jobs:
hdf5-testsuite:
runs-on: ubuntu-22.04
steps:
- name: Install dependencies
run: |
sudo apt update
sudo apt install -y --no-install-recommends wget
- uses: actions/checkout@v4
with:
submodules: recursive
- name: Build Open MPI
run: |
./autogen.pl
./configure --prefix=/opt/openmpi --with-pmix=internal --with-prrte=internal --with-hwloc=internal --with-libevent=internal --disable-mpi-fortran --disable-oshmem
make -j ${nproc} && make install
- name: Install HDF5
run: |
wget https://github.com/HDFGroup/hdf5/releases/latest/download/hdf5.tar.gz
tar -xzf hdf5.tar.gz
mv hdf5-1* hdf5
cd hdf5
export PATH=/opt/openmpi/bin:${PATH}
export LD_LIBRARY_PATH=/opt/openmpi/lib:${LD_LIBRARY_PATH}
echo ${PATH}
echo ${LD_LIBRARY_PATH}
./configure --enable-parallel
make -j ${nproc}
- name: Tweak MPI
run: |
# Tweak MPI
mca_params="$HOME/.openmpi/mca-params.conf"
mkdir -p "$(dirname "$mca_params")"
echo rmaps_base_oversubscribe = true >> "$mca_params"
mca_params="$HOME/.prte/mca-params.conf"
mkdir -p "$(dirname "$mca_params")"
echo rmaps_default_mapping_policy = :oversubscribe >> "$mca_params"
- name: Run testsuite (ompio)
run: |
export PATH=/opt/openmpi/bin:${PATH}
export LD_LIBRARY_PATH=/opt/openmpi/lib:${LD_LIBRARY_PATH}
echo ${PATH}
echo ${LD_LIBRARY_PATH}
pwd
HDF5TestExpress=0 mpirun -np 4 ./hdf5/testpar/t_shapesame
mpirun -np 4 ./hdf5/testpar/t_filters_parallel
mpirun -np 4 ./hdf5/testpar/testphdf5
timeout-minutes: 10
- name: Run testsuite (romio)
run: |
export PATH=/opt/openmpi/bin:${PATH}
export LD_LIBRARY_PATH=/opt/openmpi/lib:${LD_LIBRARY_PATH}
echo ${PATH}
echo ${LD_LIBRARY_PATH}
HDF5TestExpress=0 mpirun --mca io ^ompio -np 4 ./hdf5/testpar/t_shapesame
mpirun --mca io ^ompio -np 4 ./hdf5/testpar/t_filters_parallel
mpirun --mca io ^ompio -np 4 ./hdf5/testpar/testphdf5
timeout-minutes: 10
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