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build wheels on CI #619

Merged
merged 69 commits into from
Nov 6, 2023
Merged

build wheels on CI #619

merged 69 commits into from
Nov 6, 2023

Commits on Oct 27, 2023

  1. add wheel building scripts and workflow entries

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  2. update pr-builder entries

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  3. make wheel build/test scripts executable

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  4. call pip directly

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  5. temporarily disable install step of cucim bindings build

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  6. apply the new patch

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  7. remove patches and install YASM and openslide dev libs via system pac… 

    …kage manager
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  8. add missing apt update call

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  9. update build_wheel.sh

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  10. restore previously commented line

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  11. fix copy command (don't add -r and use *.so so cmake subfolder isn't … 

    …copied)
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  12. omit build of cuslide_benchmarks and cuslide_tests on arm64

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  13. omit building cucim_benchmarks, cucim_tests on arm64

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  14. fix patch

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  15. omit copying bin folder

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  16. update dependencies.yaml to remove non-pypi files from pyproject test… 

    …s requirements
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  17. remove imagecodecs and openslide-python test dependencies

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  18. add missing fi in if/else statement

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  19. modify CuPy package name as needed based on the CUDA version

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  20. allow test suite to run even if imagecodecs was not installed

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  21. fix path for libopenslide on Ubuntu+aarch64

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  22. remove unused patch

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  23. install imagecodecs and openslide-python on x86_64 to enable more tes… 

    …t cases
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Commits on Oct 28, 2023

  1. try installing libopenslide-dev during wheel tests as well

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  2. skip single test case requiring libopenslide

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Commits on Oct 29, 2023

  1. add additional requirements used by a small number of test cases

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  2. check if clara test cases are causing the segfault observed on CUDA 1… 

    …1.8 x86_64
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Commits on Oct 30, 2023

  1. revert unintentional workflow file change

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  2. make sure which is installed on rockylinux8

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  3. bumpy pybind11 version

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  4. Merge branch 'branch-23.12' into grelee/build-wheel-on-ci

    @jakirkham
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  5. which was added to the container, so can remove it from the build script 

    minor cleanup of ci/build_wheel.sh
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Commits on Oct 31, 2023

  1. Merge remote-tracking branch 'upstream/branch-23.12' into grelee/buil… 

    …d-wheel-on-ci
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  2. move existing apply_wheel_modifications.sh logic into build_wheel.sh

    @grlee77
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  3. refactor VERSION management following example in rapidsai/rmm#1347

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  4. fix package_src_dir in build_wheel.sh

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  5. restore python/cucim/VERSION

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  6. change python/cucim/VERSION used by CMake back to prior method

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  7. revert to old version folder C++ VERSION files

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  8. temporarily use separate VERSION_CPP for CMake

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  9. version in python/cucim/VERSION also needs to be the C++ version with… 

    …out 'a'
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  10. reduce number of separate VERSION files being used by CMake (CMakeLis… 

    …ts.txt now use top-level VERSION_CPP)
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  11. remove outdated debug commands

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  12. Merge remote-tracking branch 'upstream/branch-23.12' into grelee/buil… 

    …d-wheel-on-ci
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  13. use same test cases across CUDA versions 

    temporarily disable test_cache_hit_miss test case
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  14. fix linting issue

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  15. change matplotlib to matplotlib-base

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  16. don't install imagecodecs/openslide for wheel tests (check if skippin… 

    …g these few tests avoid segfault)
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  17. Update ci/build_wheel.sh 

    Co-authored-by: Bradley Dice <bdice@bradleydice.com>
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  18. Merge branch 'grelee/build-wheel-on-ci' of github.com:grlee77/cucim i… 

    …nto grelee/build-wheel-on-ci
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  19. Merge branch 'branch-23.12' into grelee/build-wheel-on-ci

    @grlee77
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  20. remove outdated/broken test skips. CuPy<9.0 is no longer supported

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  21. fix bad importorskip checks

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  22. run rapids-dependency-file-generator

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  23. update comment

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  24. matplotlib-base on conda, matplotlib for requirements/pyproject

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Commits on Nov 1, 2023

  1. run rapids-dependency-file-generator

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  2. simplify the build_wheel.sh by using 'run build_local all'

    @grlee77
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  3. skip openslide-based test if the package is not installed

    @grlee77
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  4. update CONTRIBUTING.md

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  5. apply black globally

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  6. cleanup test_python section of dependencies.yaml

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  7. Update CONTRIBUTING.md 

    Co-authored-by: Bradley Dice <bdice@bradleydice.com>
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Commits on Nov 3, 2023

  1. just use NEXT_FULL_TAG directly for VERSION_CPP

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  2. Update ci/build_wheel.sh 

    Co-authored-by: jakirkham <jakirkham@gmail.com>
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  3. remove unnecessary 'needs' condition

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Commits on Nov 6, 2023

  1. Merge branch 'branch-23.12' into grelee/build-wheel-on-ci

    @jakirkham
    jakirkham authored Nov 6, 2023
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  2. minor cleanup to build_wheel.sh

    @grlee77
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  3. handle stripping of alpha from VERSION string in CMake to simplify CI… 

    … scripts
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