why the output dont include the cellchat part?

[LJZYaaa]

after i run the command li.mt.rank_aggregate.by_sample, i find that the result don't have the part of cellchat what is called 'lr_probs' in the tutorail, why ?

[dbdimitrov]

Hi @LJZYaaa,

You would need to add CellChat as a method to RankAggregate in order to get it's output:
See here:
https://liana-py.readthedocs.io/en/latest/notebooks/basic_usage.html#Customizing-LIANA's-rank-aggregate

Daniel

[LJZYaaa]

Hi, gald to receive your reply ! But when i try to run the standard code in tutorial as below, it report an error :)

Do you have any idea about it ?

[dbdimitrov]

Hi @LJZYaaa

Yes, you must import those objects from liana - as done in a few lines above in the same tutorial.

Daniel