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34 Open 71 Closed
34 Open 71 Closed
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Issues list

Obsm 'local_scores' needs to be of one specific type when running li.mt.bivariate bug Something isn't working enhancement New feature or request help wanted Extra attention is needed
#147 opened Oct 2, 2024 by dertrotl
@dbdimitrov
4
why the output dont include the cellchat part? bug Something isn't working help wanted Extra attention is needed
#145 opened Sep 20, 2024 by LJZYaaa
@dbdimitrov
3
Large number of pvals are 0 without specificity bug Something isn't working help wanted Extra attention is needed
#144 opened Sep 19, 2024 by and-rewsmith
@dbdimitrov
4
li.mt.bivariate: No common columns to perform merge on bug Something isn't working help wanted Extra attention is needed
#143 opened Sep 19, 2024 by rcannood
@dbdimitrov
1
Option to aggregate individual MistyData objects from multiple samples enhancement New feature or request
#141 opened Sep 12, 2024 by whitneyt1
@dbdimitrov
4
get_hcop_orthologs bug Something isn't working help wanted Extra attention is needed
#137 opened Aug 27, 2024 by tuhulab
@dbdimitrov
1
Using data loader for performing tensor Factorization enhancement New feature or request
#136 opened Aug 22, 2024 by Mona1982
@dbdimitrov
9
Support for Calligraphy ? enhancement New feature or request
#134 opened Aug 13, 2024 by divyanshusrivastava
@dbdimitrov
1
Guidelines to choose the best parameters for bivariate analysis using Visium HD data bug Something isn't working help wanted Extra attention is needed
#133 opened Aug 13, 2024 by Rafael-Silva-Oliveira
@dbdimitrov
5
fail in running https://liana-py.readthedocs.io/en/latest/notebooks/misty.html bug Something isn't working help wanted Extra attention is needed
#130 opened Aug 4, 2024 by huiyijiangling
@dbdimitrov
1
Plot SVGs are massive in size due to color legend bug Something isn't working help wanted Extra attention is needed
#129 opened Aug 1, 2024 by dnjst
@dbdimitrov
2
Saving Misty model as .pkl enhancement New feature or request
#127 opened Jul 22, 2024 by Zach-Sten
@dbdimitrov
3
Questions about LIANA+ requirement for cell number enhancement New feature or request
#126 opened Jul 19, 2024 by jun-miao113
@dbdimitrov
3
Spatially informed bivariate metrics in tensor cell2cell and MOFA enhancement New feature or request
#123 opened Jun 25, 2024 by Zach-Sten
@dbdimitrov
3
Clarifications Differential analysis vignette help wanted Extra attention is needed
#118 opened Jun 11, 2024 by maximelepetit
@dbdimitrov
1
GeneA_GeneB gene expression level error bug Something isn't working help wanted Extra attention is needed
#115 opened Jun 5, 2024 by alecdavi
@dbdimitrov
2
Volcano plots for differentially expressed signaling pairs enhancement New feature or request
#113 opened May 30, 2024 by Zach-Sten
@dbdimitrov
2
Proper Caching for MetalinksDB & HCOP enhancement New feature or request
#111 opened May 24, 2024 by dbdimitrov
@dbdimitrov
2
Sanity check if liana uses the log normalised values enhancement New feature or request
#104 opened Apr 24, 2024 by ahmetrifaioglu
@dbdimitrov
1
AnnData dtype argument deprecation enhancement New feature or request
#103 opened Apr 19, 2024 by dbdimitrov
@dbdimitrov
Add a tutorial on GPU-accelerated misty enhancement New feature or request
#100 opened Apr 12, 2024 by dbdimitrov
@dbdimitrov
Export Elbow plot from nmf enhancement New feature or request
#99 opened Apr 12, 2024 by dbdimitrov
@dbdimitrov
Flow chart to guide standard LIANA+ workflows enhancement New feature or request
#94 opened Mar 25, 2024 by dbdimitrov
@dbdimitrov
ZeroDivisionError: float division by zero help wanted Extra attention is needed
#93 opened Mar 25, 2024 by anke-king
@dbdimitrov
10
Move Vignettes to Another Repo documentation Improvements or additions to documentation enhancement New feature or request
#90 opened Feb 21, 2024 by dbdimitrov
@dbdimitrov
ProTip! Exclude everything labeled bug with -label:bug.