Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
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Updated
May 12, 2024 - Shell
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties.
Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies
NGS4ECOPROD - An easy-to-use conda environment and pipelines for metagenome sequence analysis
BSc project: metagenomic analysis of urban park soil. Breakdown of some of the code I used can be viewed on this website:
Qiime 2, an advanced bioinformatics platform, specializes in analyzing metagenomic data. With a modular plugin architecture, integrated workflows, and visualization tools, Qiime 2 facilitates reproducible and transparent analyses, supporting both command-line and GUI interactions.
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