eDNA metabarcoding pipeline
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Updated
Sep 19, 2024 - Python
eDNA metabarcoding pipeline
An open-source data management system for tracking environmental DNA samples and metadata
Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.
Comparison between eDNA and trawling for fish biodiversity metrics
This repository contains scripts and data for training and utilizing machine learning classifiers to predict qPCR cross-amplification.
Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape
A web tool for optimally choosing eDNA primer pairs to identify a set of taxa.
Calculate optimal combination of eDNA barcodes based on amplicon sequences
Burrow-Wheeler Aligner for short-read alignment (optimized for aeDNA)
desining block alignment geneotyper tags based on the whole genome alignment or gene alignment for phylogenomics
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