Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape
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Updated
Apr 22, 2020 - R
Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape
Scripts for executing a filtering, clustering and identification pipeline for eDNA samples.
This repository contains scripts and data for training and utilizing machine learning classifiers to predict qPCR cross-amplification.
Comparison between eDNA and trawling for fish biodiversity metrics
Calculate optimal combination of eDNA barcodes based on amplicon sequences
An open-source data management system for tracking environmental DNA samples and metadata
eDNA metabarcoding pipeline
A web tool for optimally choosing eDNA primer pairs to identify a set of taxa.
desining block alignment geneotyper tags based on the whole genome alignment or gene alignment for phylogenomics
Burrow-Wheeler Aligner for short-read alignment (optimized for aeDNA)
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