netZooR is a network biology package implemented in R.
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Updated
Oct 10, 2024 - R
netZooR is a network biology package implemented in R.
Awesome GRN enhanced AnnData toolkit
Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
Evaluation framework for computationally inferred gene networks from single-cell data.
single cell foundation model for Gene network inference and more
Profiling Integrative Communities of Aggregated Single-cell Omics data
A scalable method to infer fate specific gene regulatory network from single cell gene expression data
Multi-omics differential dependency network inference
A Python package to generate prior gene regulatory networks.
Context specific and dynamic gene regulatory network reconstruction and analysis
netZooPy is a network biology package implemented in Python.
A deep model infers gene regulation networks from scRNA-seq data.
STREAM: enhancer-driven gene regulatory networks inference from single-cell RNA-seq and ATAC-seq data
R and MATLAB scripts for MAGICAL
Diffusion model for gene regulatory network inference.
Network-Oriented Repurposing of Drugs Python Package
The Single-cell Temporal Inference of Gene Regulatory (scTIGER) Networks method is a computational method designed to predict gene regulatory networks (GRNs) using paired datasets of case versus control experiments.
A platform for the interactive assessment of gene regulatory networks
The second experiment of three-phrase-dependency-analysis method, only consider the single factor.
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