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We are an interdisciplinary ecology and environmental data science research group at the University of Florida combining Ethan White’s lab, which uses data science to understand ecological systems using large ecological and environmental datasets and Morgan Ernest’s lab, which studies how ecological systems change through time and runs long-term monitoring efforts in the Everglades and the Arizona desert. We do cutting edge research, collect and publish large open datasets, develop open source software, build websites, train scientists in computational tools, and generally try to make science a better, more efficient, more diverse and inclusive place.

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  1. DeepForest DeepForest Public

    Python Package for Airborne RGB machine learning

    Python 486 172

  2. PortalData PortalData Public

    Official Repo of the Portal Project Data

    R 45 30

  3. retriever retriever Public

    Quickly download, clean up, and install public datasets into a database management system

    Python 306 134

  4. portalr portalr Public

    A collection of functions to summarize the Portal Data

    R 11 12

  5. DeepTreeAttention DeepTreeAttention Public

    Implementation of Hang et al. 2020 "Hyperspectral Image Classification with Attention Aided CNNs" for tree species prediction

    Python 119 39

  6. portalcasting portalcasting Public

    Model development, deployment, and evaluation for forecasting Portal ecosystem dynamics

    R 8 10

Repositories

Showing 10 of 183 repositories
  • DeepForest Public

    Python Package for Airborne RGB machine learning

    weecology/DeepForest’s past year of commit activity
    Python 486 MIT 172 62 (3 issues need help) 8 Updated Sep 19, 2024
  • portalr Public

    A collection of functions to summarize the Portal Data

    weecology/portalr’s past year of commit activity
    R 11 12 4 0 Updated Sep 19, 2024
  • EvergladesSpeciesModel Public

    A deepforest model for wading bird species prediction.

    weecology/EvergladesSpeciesModel’s past year of commit activity
    Python 1 MIT 1 14 0 Updated Sep 18, 2024
  • everwatch-workflow Public

    Workflow for processing UAS imagery into data on bird location and species for near real-time monitoring in the Everglades

    weecology/everwatch-workflow’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Sep 18, 2024
  • everwatch-predictions Public

    Data on Everglades wading bird colony abundances from the EverWatch computer vision workflow

    weecology/everwatch-predictions’s past year of commit activity
    0 CC0-1.0 1 0 0 Updated Sep 18, 2024
  • weecology/portal-forecasts’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Sep 17, 2024
  • PortalData Public

    Official Repo of the Portal Project Data

    weecology/PortalData’s past year of commit activity
    R 45 30 6 1 Updated Sep 16, 2024
  • MillionTrees Public

    The MillionTreesBenchmark

    weecology/MillionTrees’s past year of commit activity
    Python 8 GPL-3.0 2 7 0 Updated Sep 13, 2024
  • TreeSegmentation Public

    Reproducible analysis of tree segmentation methods in R.

    weecology/TreeSegmentation’s past year of commit activity
    HTML 8 3 4 0 Updated Sep 13, 2024
  • ogrants Public

    Open grants list

    weecology/ogrants’s past year of commit activity

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