v1.7.4

This is a patch release that addresses:

• Remove py2neo dependency and code (#356)
  • This prevented anyone from installing medcat since it was no longer available on pypi
  • PS! It may still work for some folk if the py2neo package is cached by pip, but at some point the cache will be invalidated

Full Changelog: v1.7.3...v1.7.4

v1.6.1

This is a patch release that addresses:

• Fix fakedict/config issue (#341)
• Remove py2neo dependency and code (#356)
  • This prevented anyone from installing medcat since it was no longer available on pypi
  • PS! It may still work for some folk if the py2neo package is cached by pip, but at some point the cache will be invalidated
• Some minor changes to make GHA pass
  • Fix for Rosalind links (#342)
  • Allow production workflow on .post branches
  • Make production workflow use correct branch
  • Bump ubuntu version in publish workflow (from 18.04 to 20.04)
  • Bump mypy version to 0.991 for compatibility
  • Pin pydantic version to less than 1.8 for spacy compatibility

Full Changelog: v1.6.0...v1.6.1

v1.5.3

This is a patch release that addresses:

• Fix fakedict/config issue (#341)
• Remove py2neo dependency and code (#356)
  • This prevented anyone from installing medcat since it was no longer available on pypi
  • PS! It may still work for some folk if the py2neo package is cached by pip, but at some point the cache will be invalidated
• Some minor changes to make GHA pass
  • Fix for Rosalind links (#287 and #342)
  • Allow main workflow on .post branches
  • Allow prudiction workflow on .post branches
  • Make production workflow use correct branch
  • Bump ubuntu version in publish workflow (from 18.04 to 20.04)
  • Bump mypy version to 0.991 for compatibility
  • Pin pydantic version to less than 1.8 for spacy compatibility

Full Changelog: v1.5.0...v1.5.3

v1.9.3 - patch fix for dependency issues

What's Changed

• CU-8692wgmkm: Remove py2neo dependency and the code that used it by @mart-r in #356
• CU-8692wcmp7: update transformers to the latest version by @tomolopolis in #355
• v1.19.3 by @tomolopolis in #357

Full Changelog: v1.9.2...v1.9.3

v1.9.2

What's Changed

• CU-8692kpchc Fix for Rosalind link not working by @mart-r in #342
• Fix issue 340 (snomed preprocessing) by @mart-r in #343
• CU-8692kn0yv Fix issue with fake dict in identifier based config by @mart-r in #341
• CU-8692mevx8 Fix issue with filters not taking effect in train_supervised method by @mart-r in #345
• CU-8692wb8gf: 'tokenizers>=0.12.0', # 0.13.1 doesn't seem to build by @tomolopolis in #353
• v1.19.2 Patch Fix by @tomolopolis in #354

Full Changelog: v1.9.1...v1.9.2

v1.8.1

This attempts to fix issues related to the following PRs:
#341
#345

Full Changelog: 1.8.0...v1.8.1

v1.7.3

This attempts to fix issues related to the following PRs:
#341
#345

Full Changelog: v1.7.0...v1.7.3

v1.9.1

Patch release to fix some issues.

This fixes an issue with configs not working as dicts (the .get method would not work if the attribute didn't exist). Issue introduced in v1.4.0.
It also fixes an issue with filters not working properly in CAT.train_supervised. Issue introduced in 1.6.0.
And some other smaller changes.

What's Changed

• CU-8692kpchc Fix for Rosalind link not working by @mart-r in #342
• Fix issue 340 (snomed preprocessing) by @mart-r in #343
• CU-8692kn0yv Fix issue with fake dict in identifier based config by @mart-r in #341
• CU-8692mevx8 Fix issue with filters not taking effect in train_supervised method by @mart-r in #345

Full Changelog: v1.9.0...v1.9.1

MedCAT v1.9.0

What's Changed

• Documentation fixes by @mart-r in #332
• Bump aiohttp from 3.8.3 to 3.8.5 by @dependabot in #333
• CU-862k77jjj: changes needed for Trainer metrics page by @tomolopolis in #336
• v1.9.0 Release PR by @tomolopolis in #337

Full Changelog: 1.8.0...v1.9.0

MedCAT v1.8.0

What's Changed

• CU-8677ge6j8 Version identification and updating by @mart-r in #313
• Pin down transformers for the de-identification model by @baixiac in #314
• Added function to remove CUI from cdb by @antsh3k in #316
• CU-862jjprjw Fix github actions failures by @mart-r in #317
• CU-862jr8wkk Pin pydantic dependency to avoid conflicts with v2.0 by @mart-r in #318
• Bump django from 3.2.18 to 3.2.19 in /webapp/webapp by @dependabot in #320
• CU-862jr8wkk Pin pydantic dependency to avoid conflicts with v2.0 (#318) by @mart-r in #319
• CU-863gntc58 Umlspt2ch by @mart-r in #322
• Fix for Issue 325 by @mart-r in #326
• CU-86783u6d9 Add wrapper to simplify De-ID model usage by @mart-r in #324
• CU-862k1tt90 Fix circular imports by moving raw deid method back to helpers module by @mart-r in #328
• Cu 863h30jyb separate train from data load by @mart-r in #329
• CU-86785yhfk Add method to populate cui2snames with data from cui2names by @mart-r in #327
• Bump django from 3.2.19 to 3.2.20 in /webapp/webapp by @dependabot in #330
• CU-346mpwz Improving memory usage of MedCAT models by @mart-r in #323

Full Changelog: v1.7.0...v1.8.0