Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Huffman islatravir dataset submission (#91) #94

Merged
merged 10 commits into from
Jun 11, 2021
Merged

Huffman islatravir dataset submission (#91) #94

merged 10 commits into from
Jun 11, 2021

Conversation

michaelmaser
Copy link
Contributor

No description provided.

@github-actions
Copy link

github-actions bot commented Jun 4, 2021

Change summary:

Filename Added Removed Changed
Huffman_islatravir_dataset.pbtxt 3 0 0
3 0 0

@brilee
Copy link
Contributor

brilee commented Jun 6, 2021

is there something new in this dataset or do you just need a rubber-stamp to check it into the git-LFS system?

@brilee
Copy link
Contributor

brilee commented Jun 6, 2021

ooh, I see - the PR I previously reviewed was just merely merged into this branch

@michaelmaser
Copy link
Contributor Author

Yes, thanks! Is there a way to trigger the process_submission check that I'm missing?

@connorcoley connorcoley closed this Jun 7, 2021
@connorcoley connorcoley reopened this Jun 7, 2021
@connorcoley
Copy link
Contributor

Usually closing and re-opening is enough. @skearnes ?

@connorcoley connorcoley closed this Jun 7, 2021
@connorcoley connorcoley reopened this Jun 7, 2021
@skearnes
Copy link
Contributor

skearnes commented Jun 7, 2021

Hmm...that key error suggests we aren't doing the linking between reactions correctly; I'll take a look tomorrow.

@skearnes skearnes closed this Jun 9, 2021
@skearnes skearnes reopened this Jun 9, 2021
@github-actions
Copy link

github-actions bot commented Jun 9, 2021

Change summary:

Filename Added Removed Changed
data/6a/ord_dataset-6a0bfcdf53a64c07987822162ae591e2.pb.gz 3 0 0
3 0 0

@skearnes skearnes closed this Jun 9, 2021
@skearnes skearnes reopened this Jun 9, 2021
@github-actions
Copy link

github-actions bot commented Jun 9, 2021

Change summary:

Filename Added Removed Changed
data/6a/ord_dataset-6a0bfcdf53a64c07987822162ae591e2.pb.gz 3 0 0
3 0 0

@github-actions
Copy link

Change summary:

Filename Added Removed Changed
data/6a/ord_dataset-6a0bfcdf53a64c07987822162ae591e2.pb.gz 3 0 0
3 0 0

@skearnes
Copy link
Contributor

@michaelmaser should be good to go. Please double-check the cross-references before merging.

@michaelmaser michaelmaser merged commit d995036 into main Jun 11, 2021
@michaelmaser
Copy link
Contributor Author

Thanks, @skearnes! Cross-references looked good in loaded pb.

@michaelmaser michaelmaser deleted the #91 branch June 11, 2021 17:48
skearnes added a commit that referenced this pull request Jun 17, 2021
* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
connorcoley added a commit that referenced this pull request Jun 26, 2021
* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
connorcoley added a commit that referenced this pull request Jun 29, 2021
* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
skearnes added a commit that referenced this pull request Jul 2, 2021
* Cc submission biginelli (#83)

* Update to match 'main' (#82)

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

Co-authored-by: github-actions <github-actions@github.com>

* Biginelli dataset (#78)

* Biginelli dataset

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

* Update dataset name

* Revert "Biginelli dataset"

This reverts commit 97c3cdd.

* New biginelli dataset (renamed)

* Updates after reviews

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update submission

* Update badges

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema version to 0.3.9 (#88)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
skearnes added a commit that referenced this pull request Jul 6, 2021
* Cc submission biginelli (#83)

* Update to match 'main' (#82)

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

Co-authored-by: github-actions <github-actions@github.com>

* Biginelli dataset (#78)

* Biginelli dataset

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

* Update dataset name

* Revert "Biginelli dataset"

This reverts commit 97c3cdd.

* New biginelli dataset (renamed)

* Updates after reviews

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update submission

* Update badges

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema version to 0.3.9 (#88)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* Use conda's pip (#106)

* bump ord-schema version

* Use conda's pip

Avoids having two versions of pandas installed, which is causing the build to fail.

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
skearnes added a commit that referenced this pull request Jul 7, 2021
* Merge 'main' into #86 (#105)

* Cc submission biginelli (#83)

* Update to match 'main' (#82)

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

Co-authored-by: github-actions <github-actions@github.com>

* Biginelli dataset (#78)

* Biginelli dataset

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

* Update dataset name

* Revert "Biginelli dataset"

This reverts commit 97c3cdd.

* New biginelli dataset (renamed)

* Updates after reviews

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update submission

* Update badges

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema version to 0.3.9 (#88)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Merge 'main' into #86 (#107)

* Cc submission biginelli (#83)

* Update to match 'main' (#82)

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

Co-authored-by: github-actions <github-actions@github.com>

* Biginelli dataset (#78)

* Biginelli dataset

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

* Update dataset name

* Revert "Biginelli dataset"

This reverts commit 97c3cdd.

* New biginelli dataset (renamed)

* Updates after reviews

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update submission

* Update badges

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema version to 0.3.9 (#88)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* Use conda's pip (#106)

* bump ord-schema version

* Use conda's pip

Avoids having two versions of pandas installed, which is causing the build to fail.

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Add hein-dataset.pbtxt (#86)

* Add hein-dataset.pbtxt

* fix product duplication

* Fix catalyst SMILES

* updates

* updates

* Update submission

* Update badges

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
skearnes added a commit that referenced this pull request Jul 7, 2021
* Merge main into 93 (#101)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Uploading Dataset for https://doi.org/10.1039/C5SC04751J Partial Figure 4 (#93)

* Add files via upload

* Update File

* Reupload with correct internal standard concentration

* Update submission

* Update badges

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: mwleklin <44303709+mwleklin@users.noreply.github.com>
connorcoley added a commit that referenced this pull request Jul 22, 2021
* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* Use conda's pip (#106)

* bump ord-schema version

* Use conda's pip

Avoids having two versions of pandas installed, which is causing the build to fail.

* #86 (#108)

* Merge 'main' into #86 (#105)

* Cc submission biginelli (#83)

* Update to match 'main' (#82)

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

Co-authored-by: github-actions <github-actions@github.com>

* Biginelli dataset (#78)

* Biginelli dataset

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

* Update dataset name

* Revert "Biginelli dataset"

This reverts commit 97c3cdd.

* New biginelli dataset (renamed)

* Updates after reviews

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update submission

* Update badges

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema version to 0.3.9 (#88)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Merge 'main' into #86 (#107)

* Cc submission biginelli (#83)

* Update to match 'main' (#82)

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

Co-authored-by: github-actions <github-actions@github.com>

* Biginelli dataset (#78)

* Biginelli dataset

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

* Update dataset name

* Revert "Biginelli dataset"

This reverts commit 97c3cdd.

* New biginelli dataset (renamed)

* Updates after reviews

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update submission

* Update badges

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema version to 0.3.9 (#88)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* Use conda's pip (#106)

* bump ord-schema version

* Use conda's pip

Avoids having two versions of pandas installed, which is causing the build to fail.

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Add hein-dataset.pbtxt (#86)

* Add hein-dataset.pbtxt

* fix product duplication

* Fix catalyst SMILES

* updates

* updates

* Update submission

* Update badges

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Merge #93 into main (#109)

* Merge main into 93 (#101)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Uploading Dataset for https://doi.org/10.1039/C5SC04751J Partial Figure 4 (#93)

* Add files via upload

* Update File

* Reupload with correct internal standard concentration

* Update submission

* Update badges

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: mwleklin <44303709+mwleklin@users.noreply.github.com>

* Expt2 10.1021/acs.accounts.0c00760 (#100) (#114)

* Expt2 10.1021/acs.accounts.0c00760 (#100)

* Add files via upload

* Delete Figure4_dataset.pbtxt

* Uploading Data for 10.1021/acs.accounts.0c00760

* Add files via upload

Co-authored-by: Steven Kearnes <kearnes@google.com>

* Update submission

* Update badges

Co-authored-by: mwleklin <44303709+mwleklin@users.noreply.github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update DOI list (#111)

* bump ord-schema version

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: mwleklin <44303709+mwleklin@users.noreply.github.com>
brilee added a commit that referenced this pull request Jul 28, 2021
* Electroreductive coupling of Alkenyl and Benzyl Halides

* Fix validation errors

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update delano dataset

* Upload dataset as .pb.gz

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* Use conda's pip (#106)

* bump ord-schema version

* Use conda's pip

Avoids having two versions of pandas installed, which is causing the build to fail.

* #86 (#108)

* Merge 'main' into #86 (#105)

* Cc submission biginelli (#83)

* Update to match 'main' (#82)

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

Co-authored-by: github-actions <github-actions@github.com>

* Biginelli dataset (#78)

* Biginelli dataset

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

* Update dataset name

* Revert "Biginelli dataset"

This reverts commit 97c3cdd.

* New biginelli dataset (renamed)

* Updates after reviews

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update submission

* Update badges

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema version to 0.3.9 (#88)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Merge 'main' into #86 (#107)

* Cc submission biginelli (#83)

* Update to match 'main' (#82)

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

Co-authored-by: github-actions <github-actions@github.com>

* Biginelli dataset (#78)

* Biginelli dataset

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

* Update dataset name

* Revert "Biginelli dataset"

This reverts commit 97c3cdd.

* New biginelli dataset (renamed)

* Updates after reviews

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update submission

* Update badges

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema version to 0.3.9 (#88)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* Use conda's pip (#106)

* bump ord-schema version

* Use conda's pip

Avoids having two versions of pandas installed, which is causing the build to fail.

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Add hein-dataset.pbtxt (#86)

* Add hein-dataset.pbtxt

* fix product duplication

* Fix catalyst SMILES

* updates

* updates

* Update submission

* Update badges

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Merge #93 into main (#109)

* Merge main into 93 (#101)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Uploading Dataset for https://doi.org/10.1039/C5SC04751J Partial Figure 4 (#93)

* Add files via upload

* Update File

* Reupload with correct internal standard concentration

* Update submission

* Update badges

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: mwleklin <44303709+mwleklin@users.noreply.github.com>

* Expt2 10.1021/acs.accounts.0c00760 (#100) (#114)

* Expt2 10.1021/acs.accounts.0c00760 (#100)

* Add files via upload

* Delete Figure4_dataset.pbtxt

* Uploading Data for 10.1021/acs.accounts.0c00760

* Add files via upload

Co-authored-by: Steven Kearnes <kearnes@google.com>

* Update submission

* Update badges

Co-authored-by: mwleklin <44303709+mwleklin@users.noreply.github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update DOI list (#111)

* bump ord-schema version

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update with optical rotations

* Fix negative float validations.

* Update dataset description for Electrochem dataset.

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: mwleklin <44303709+mwleklin@users.noreply.github.com>
brilee added a commit that referenced this pull request Jul 28, 2021
* Updating electrochem branch from main (#115)

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* Use conda's pip (#106)

* bump ord-schema version

* Use conda's pip

Avoids having two versions of pandas installed, which is causing the build to fail.

* #86 (#108)

* Merge 'main' into #86 (#105)

* Cc submission biginelli (#83)

* Update to match 'main' (#82)

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

Co-authored-by: github-actions <github-actions@github.com>

* Biginelli dataset (#78)

* Biginelli dataset

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

* Update dataset name

* Revert "Biginelli dataset"

This reverts commit 97c3cdd.

* New biginelli dataset (renamed)

* Updates after reviews

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update submission

* Update badges

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema version to 0.3.9 (#88)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Merge 'main' into #86 (#107)

* Cc submission biginelli (#83)

* Update to match 'main' (#82)

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

Co-authored-by: github-actions <github-actions@github.com>

* Biginelli dataset (#78)

* Biginelli dataset

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

* Update dataset name

* Revert "Biginelli dataset"

This reverts commit 97c3cdd.

* New biginelli dataset (renamed)

* Updates after reviews

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update submission

* Update badges

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema version to 0.3.9 (#88)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* Use conda's pip (#106)

* bump ord-schema version

* Use conda's pip

Avoids having two versions of pandas installed, which is causing the build to fail.

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Add hein-dataset.pbtxt (#86)

* Add hein-dataset.pbtxt

* fix product duplication

* Fix catalyst SMILES

* updates

* updates

* Update submission

* Update badges

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Merge #93 into main (#109)

* Merge main into 93 (#101)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Uploading Dataset for https://doi.org/10.1039/C5SC04751J Partial Figure 4 (#93)

* Add files via upload

* Update File

* Reupload with correct internal standard concentration

* Update submission

* Update badges

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: mwleklin <44303709+mwleklin@users.noreply.github.com>

* Expt2 10.1021/acs.accounts.0c00760 (#100) (#114)

* Expt2 10.1021/acs.accounts.0c00760 (#100)

* Add files via upload

* Delete Figure4_dataset.pbtxt

* Uploading Data for 10.1021/acs.accounts.0c00760

* Add files via upload

Co-authored-by: Steven Kearnes <kearnes@google.com>

* Update submission

* Update badges

Co-authored-by: mwleklin <44303709+mwleklin@users.noreply.github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update DOI list (#111)

* bump ord-schema version

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: mwleklin <44303709+mwleklin@users.noreply.github.com>

* Electroreductive coupling of Alkenyl and Benzyl Halides (#98)

* Electroreductive coupling of Alkenyl and Benzyl Halides

* Fix validation errors

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update delano dataset

* Upload dataset as .pb.gz

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* Use conda's pip (#106)

* bump ord-schema version

* Use conda's pip

Avoids having two versions of pandas installed, which is causing the build to fail.

* #86 (#108)

* Merge 'main' into #86 (#105)

* Cc submission biginelli (#83)

* Update to match 'main' (#82)

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

Co-authored-by: github-actions <github-actions@github.com>

* Biginelli dataset (#78)

* Biginelli dataset

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

* Update dataset name

* Revert "Biginelli dataset"

This reverts commit 97c3cdd.

* New biginelli dataset (renamed)

* Updates after reviews

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update submission

* Update badges

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema version to 0.3.9 (#88)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Merge 'main' into #86 (#107)

* Cc submission biginelli (#83)

* Update to match 'main' (#82)

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

Co-authored-by: github-actions <github-actions@github.com>

* Biginelli dataset (#78)

* Biginelli dataset

* Add dataset from Novartis (#79)

* Add dataset from Novartis

* Update submission

* Update badges

* Updates from @connorcoley (#80)

* Updates from @connorcoley

* Update badges

* use pbtxt

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema to v0.3.4 (#81)

* Update dataset name

* Revert "Biginelli dataset"

This reverts commit 97c3cdd.

* New biginelli dataset (renamed)

* Updates after reviews

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update submission

* Update badges

Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Bump ord-schema version to 0.3.9 (#88)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* OrgSyn example from ord_schema (#95) (#102)

* OrgSyn example from ord_schema (#95)

* OrgSyn example from ord_schema

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

* Revisions, adding workup

* Addition order

* Extra drying step

* Fix reaction role

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103) (#104)

* Flow dataset from https://pubs.acs.org/doi/full/10.1021/co400012m (#103)

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* Use conda's pip (#106)

* bump ord-schema version

* Use conda's pip

Avoids having two versions of pandas installed, which is causing the build to fail.

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Add hein-dataset.pbtxt (#86)

* Add hein-dataset.pbtxt

* fix product duplication

* Fix catalyst SMILES

* updates

* updates

* Update submission

* Update badges

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Merge #93 into main (#109)

* Merge main into 93 (#101)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84) (#87)

* Coupling of α-carboxyl sp3-carbons with aryl halides (#84)

* New biginelli dataset (renamed)

* Updates after reviews

* Photoredox submission

* Remove biginelli from fork (bad branch management)

* Fix Iridium charge state

* Update submission

* Update badges

Co-authored-by: github-actions <github-actions@github.com>

* bump ord-schema version (#96)

* Huffman islatravir dataset submission (#91) (#94)

* Huffman islatravir dataset submission (#91)

* Update submission

* Update badges

* resolve reactions.svg conflict

* Update badges

* Reset reaction IDs to workaround a bug in updates.py

* Update submission

Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>

* upload new data (#97) (#99)

* upload new data (#97)

* upload data

https://doi.org/10.26434/chemrxiv.14388557.v1

* delete old data

* upload new version of data

Added ligand name, double checked ligand structures

* Update submission

* Update badges

Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>

* Uploading Dataset for https://doi.org/10.1039/C5SC04751J Partial Figure 4 (#93)

* Add files via upload

* Update File

* Reupload with correct internal standard concentration

* Update submission

* Update badges

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: mwleklin <44303709+mwleklin@users.noreply.github.com>

* Expt2 10.1021/acs.accounts.0c00760 (#100) (#114)

* Expt2 10.1021/acs.accounts.0c00760 (#100)

* Add files via upload

* Delete Figure4_dataset.pbtxt

* Uploading Data for 10.1021/acs.accounts.0c00760

* Add files via upload

Co-authored-by: Steven Kearnes <kearnes@google.com>

* Update submission

* Update badges

Co-authored-by: mwleklin <44303709+mwleklin@users.noreply.github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: github-actions <github-actions@github.com>

* Update DOI list (#111)

* bump ord-schema version

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update with optical rotations

* Fix negative float validations.

* Update dataset description for Electrochem dataset.

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: mwleklin <44303709+mwleklin@users.noreply.github.com>

* Update submission

* Update badges

Co-authored-by: Connor Coley <connorcoley@users.noreply.github.com>
Co-authored-by: Jason Wang <jasonwanglmao@gmail.com>
Co-authored-by: github-actions <github-actions@github.com>
Co-authored-by: Steven Kearnes <kearnes@google.com>
Co-authored-by: Michael Maser <46490857+michaelmaser@users.noreply.github.com>
Co-authored-by: Steven Kearnes <skearnes@relaytx.com>
Co-authored-by: mwleklin <44303709+mwleklin@users.noreply.github.com>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

4 participants